Evidence map›Paper›PMID 33219217›Full record

ArticleNature communications2020

Structural asymmetry governs the assembly and GTPase activity of McrBC restriction complexes.

Yiming Niu, Hiroshi Suzuki, Christopher J Hosford, Thomas Walz, Joshua S Chappie

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Anti-plasmid defense in hypervirulentEmerging microbes & infections · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Yiming NiuDepartment of Molecular Medicine, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-5683-1781
Hiroshi SuzukiLaboratory of Molecular Electron Microscopy, The Rockefeller University, New York, NY, USA.ORCID 0000-0001-5371-6385
Christopher J HosfordDepartment of Molecular Medicine, Cornell University, Ithaca, NY, USA.
Thomas WalzLaboratory of Molecular Electron Microscopy, The Rockefeller University, New York, NY, USA. twalz@rockefeller.edu.ORCID 0000-0003-2606-2835
Joshua S ChappieDepartment of Molecular Medicine, Cornell University, Ithaca, NY, USA. chappie@cornell.edu.ORCID 0000-0002-5733-7275
Cornell University · USNew England Biolabs (United States) · USRockefeller University · USTokyo Medical and Dental University · JP

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Structural and Functional Characterization of the McrBC Restriction SystemR01GM120242 · NIGMS · CORNELL UNIVERSITY · PI CHAPPIE, JOSHUA S · 2018 to 2022
$1.8M
NCRR NIH HHS S10 RR029205NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM120242
6 · The paper itself

Abstract

McrBC complexes are motor-driven nucleases functioning in bacterial self-defense by cleaving foreign DNA. The GTP-specific AAA + protein McrB powers translocation along DNA and its hydrolysis activity is stimulated by its partner nuclease McrC. Here, we report cryo-EM structures of Thermococcus gammatolerans McrB and McrBC, and E. coli McrBC. The McrB hexamers, containing the necessary catalytic machinery for basal GTP hydrolysis, are intrinsically asymmetric. This asymmetry directs McrC binding so that it engages a single active site, where it then uses an arginine/lysine-mediated hydrogen-bonding network to reposition the asparagine in the McrB signature motif for optimal catalytic function. While the two McrBC complexes use different DNA-binding domains, these contribute to the same general GTP-recognition mechanism employed by all G proteins. Asymmetry also induces distinct inter-subunit interactions around the ring, suggesting a coordinated and directional GTP-hydrolysis cycle. Our data provide insights into the conserved molecular mechanisms governing McrB family AAA + motors.

Indexed as

DNA Restriction EnzymesThermococcusArchaeaBacterial ProteinsCryoelectron MicroscopyGTP PhosphohydrolasesGuanosine TriphosphateHydrolysisBacterial ProteinsDNA Restriction EnzymesGTP PhosphohydrolasesGuanosine TriphosphateMcrBC endonuclease

Identifiers

PMID33219217
PMCPMC7680126
OpenAlexW3104438892

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.