Evidence map›Paper›PMID 33219089›Full record

ArticleRNA (New York, N.Y.)2021

An open interface in the pre-80S ribosome coordinated by ribosome assembly factors Tsr1 and Dim1 enables temporal regulation of Fap7.

Jay Rai, Melissa D Parker, Haina Huang, Stefan Choy, Homa Ghalei, Matthew C Johnson, Katrin Karbstein, M Elizabeth Stroupe

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  11. Assembly factors chaperone ribosomal RNA folding by isolating helical junctions that are prone to misfolding.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jay Rai *Department of Biological Science and the Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306, USA.
Melissa D Parker *Department of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.
Haina HuangDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.
Stefan ChoyDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.
Homa GhaleiDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.
Matthew C JohnsonDepartment of Biological Science and the Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306, USA.
Katrin KarbsteinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.ORCID 0000-0002-4034-1331
M Elizabeth StroupeDepartment of Biological Science and the Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306, USA.ORCID 0000-0002-4393-1951
Scripps Research Institute · USFlorida State University · US

Funding

Dissecting the Mechanisms of Regulation and Quality Control in Ribosome Assembly and the Consequences of their FailureR35GM136323 · NIGMS · VANDERBILT UNIVERSITY · PI Katrin Karbstein · 2020 to 2026
$6.1M
Quality Control in Ribosome Assembly - the Function of Regulatory ProteinsR01GM086451 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KARBSTEIN, KATRIN · 2009 to 2019
$4.8M
The Southeastern Consortium for Microscopy of MacroMolecular MachinesU24GM116788 · NIGMS · FLORIDA STATE UNIVERSITY · PI AGBANDJE-MCKENNA, MAVIS, BULLITT, ESTHER · 2016 to 2020
$4.6M
Purchase of a FEI Titan Krios for 3-D EMS10RR025080 · NCRR · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 2008 to 2008
$2.0M
Kinase-mediated assembly of the mRNA entry channel in 40S ribosomesR01GM117093 · NIGMS · SCRIPPS FLORIDA · PI KARBSTEIN, KATRIN · 2016 to 2019
$1.7M
Purchase of a direct electron camera for the Titan-Krios at FSUS10OD018142 · OD · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 2014 to 2014
$384k
NCRR NIH HHS S10 RR025080NIGMS NIH HHS R01 GM086451NIGMS NIH HHS R01 GM117093NIGMS NIH HHS R35 GM136323NIGMS NIH HHS U24 GM116788NIH HHS S10 OD018142
6 · The paper itself

Abstract

During their maturation, nascent 40S subunits enter a translation-like quality control cycle, where they are joined by mature 60S subunits to form 80S-like ribosomes. While these assembly intermediates are essential for maturation and quality control, how they form, and how their structure promotes quality control, remains unknown. To address these questions, we determined the structure of an 80S-like ribosome assembly intermediate to an overall resolution of 3.4 Å. The structure, validated by biochemical data, resolves a large body of previously paradoxical data and illustrates how assembly and translation factors cooperate to promote the formation of an interface that lacks many mature subunit contacts but is stabilized by the universally conserved methyltransferase Dim1. We also show how Tsr1 enables this interface by blocking the canonical binding of eIF5B to 40S subunits, while maintaining its binding to 60S. The structure also shows how this interface leads to unfolding of the platform, which allows for temporal regulation of the ATPase Fap7, thus linking 40S maturation to quality control during ribosome assembly.

Indexed as

Gene Expression Regulation, FungalAdenylate KinaseBinding SitesMethyltransferasesModels, MolecularNuclear ProteinsNucleoside-TriphosphataseOrganelle BiogenesisProtein BindingProtein BiosynthesisProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsRibosomal ProteinsRibosome Subunits, Large, EukaryoticRibosome Subunits, Small, EukaryoticAdenylate KinaseDIM1 protein, S cerevisiaeFAP7 protein, S cerevisiaeMethyltransferasesNuclear ProteinsNucleoside-TriphosphatasePNO1 protein, S cerevisiaeRibosomal ProteinsSaccharomyces cerevisiae ProteinsTsr1 protein, S cerevisiaecryo-EMribosome assemblysmall ribosome subunit

Identifiers

PMID33219089
PMCPMC7812869
OpenAlexW3101744984

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.