Evidence map›Paper›PMID 33215731›Full record

ArticleBioEssays : news and reviews in molecular, cellular and developmental biology2021

Soft repression: Subtle transcriptional regulation with global impact.

Anindita Mitra, Ana-Maria Raicu, Stephanie L Hickey, Lori A Pile, David N Arnosti

Open access · hybridAbstract read
In one paragraph

Article in BioEssays : news and reviews in molecular, cellular and developmental biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Chromatin enables precise and scalable gene regulation with factors of limited specificity.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anindita MitraDepartment of Biological Sciences, Wayne State University, Detroit, Michigan, USA.
Ana-Maria RaicuCell and Molecular Biology Program, Michigan State University, East Lansing, Michigan, USA.
Stephanie L HickeyDepartment of Computational Mathematics, Science, and Engineering, Michigan State University, East Lansing, Michigan, USA.
Lori A PileDepartment of Biological Sciences, Wayne State University, Detroit, Michigan, USA.ORCID 0000-0002-7189-4828
David N ArnostiDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0003-0983-6982
Michigan State University · USWayne State University · US

Funding

Role of Histone Deacetylation in Cell Cycle Progression and DevelopmentR01GM088886 · NIGMS · WAYNE STATE UNIVERSITY · PI PILE, LORI A · 2011 to 2015
$1.4M
Biochemical, Genomic and Computational Analysis of Transcriptional RepressionR01GM124137 · NIGMS · MICHIGAN STATE UNIVERSITY · PI ARNOSTI, DAVID N · 2017 to 2020
$1.2M
NIGMS NIH HHS R01 GM088886NIGMS NIH HHS R01 GM124137Office of the Vice President for Research, Wayne State University (LAP)
6 · The paper itself

Abstract

Pleiotropically acting eukaryotic corepressors such as retinoblastoma and SIN3 have been found to physically interact with many widely expressed "housekeeping" genes. Evidence suggests that their roles at these loci are not to provide binary on/off switches, as is observed at many highly cell-type specific genes, but rather to serve as governors, directly modulating expression within certain bounds, while not shutting down gene expression. This sort of regulation is challenging to study, as the differential expression levels can be small. We hypothesize that depending on context, corepressors mediate "soft repression," attenuating expression in a less dramatic but physiologically appropriate manner. Emerging data indicate that such regulation is a pervasive characteristic of most eukaryotic systems, and may reflect the mechanistic differences between repressor action at promoter and enhancer locations. Soft repression may represent an essential component of the cybernetic systems underlying metabolic adaptations, enabling modest but critical adjustments on a continual basis.

Indexed as

Repressor ProteinsTranscription, GeneticGene Expression RegulationHistone DeacetylasesPromoter Regions, GeneticHistone DeacetylasesRepressor Proteinsgene regulationmetabolismpromoterrepressionretinoblastomaSIN3transcription

Identifiers

PMID33215731
PMCPMC9068271
OpenAlexW3100755790

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.