Evidence map›Paper›PMID 33214765›Full record

ReviewCurrent genomics2020

Dissecting the Role of Promoters of Pathogen-sensitive Genes in Plant Defense.

Indrani Baruah, Gajendra Mohan Baldodiya, Jagajjit Sahu, Geetanjali Baruah

Abstract readReview
In one paragraph

Review in Current genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Indrani Baruah1Biotechnology Group, CSIR-NEIST, Jorhat-785006, Assam, India; 2Academy of Scientific and Innovative Research (AcSIR), CSIR-NEIST Campus, Jorhat-785006, Assam, India; 3Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat-785013, Assam, India; 4Department of Mycology & Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University (BHU), Varanasi-221005, Uttar Pradesh, India; 5Environment Division, Assam Science Technology & Environment Council, Bigyan Bhawan, Guwahati-781005, Assam, India.
Gajendra Mohan Baldodiya1Biotechnology Group, CSIR-NEIST, Jorhat-785006, Assam, India; 2Academy of Scientific and Innovative Research (AcSIR), CSIR-NEIST Campus, Jorhat-785006, Assam, India; 3Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat-785013, Assam, India; 4Department of Mycology & Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University (BHU), Varanasi-221005, Uttar Pradesh, India; 5Environment Division, Assam Science Technology & Environment Council, Bigyan Bhawan, Guwahati-781005, Assam, India.
Jagajjit Sahu1Biotechnology Group, CSIR-NEIST, Jorhat-785006, Assam, India; 2Academy of Scientific and Innovative Research (AcSIR), CSIR-NEIST Campus, Jorhat-785006, Assam, India; 3Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat-785013, Assam, India; 4Department of Mycology & Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University (BHU), Varanasi-221005, Uttar Pradesh, India; 5Environment Division, Assam Science Technology & Environment Council, Bigyan Bhawan, Guwahati-781005, Assam, India.
Geetanjali Baruah1Biotechnology Group, CSIR-NEIST, Jorhat-785006, Assam, India; 2Academy of Scientific and Innovative Research (AcSIR), CSIR-NEIST Campus, Jorhat-785006, Assam, India; 3Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat-785013, Assam, India; 4Department of Mycology & Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University (BHU), Varanasi-221005, Uttar Pradesh, India; 5Environment Division, Assam Science Technology & Environment Council, Bigyan Bhawan, Guwahati-781005, Assam, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants inherently show resistance to pathogen attack but are susceptible to multiple bacteria, viruses, fungi, and phytoplasmas. Diseases as a result of such infection leads to the deterioration of crop yield. Several pathogen-sensitive gene activities, promoters of such genes, associated transcription factors, and promoter elements responsible for crosstalk between the defense signaling pathways are involved in plant resistance towards a pathogen. Still, only a handful of genes and their promoters related to plant resistance have been identified to date. Such pathogen-sensitive promoters are accountable for elevating the transcriptional activity of certain genes in response to infection. Also, a suitable promoter is a key to devising successful crop improvement strategies as it ensures the optimum expression of the required transgene. The study of the promoters also helps in mining more details about the transcription factors controlling their activities and helps to unveil the involvement of new genes in the pathogen response. Therefore, the only way out to formulate new solutions is by analyzing the molecular aspects of these promoters in detail. In this review, we provided an overview of the promoter motifs and cis-regulatory elements having specific roles in pathogen attack response. To elaborate on the importance and get a vivid picture of the pathogen-sensitive promoter sequences, the key motifs and promoter elements were analyzed with the help of PlantCare and interpreted with available literature. This review intends to provide useful information for reconstructing the gene networks underlying the resistance of plants against pathogens.

Indexed as

circoscrop improvementdefense signalingPathogen-induced promoterspathogen resistancePlantCaresynthetic promoterstranscription factors

Identifiers

PMID33214765
PMCPMC7604749

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.