Evidence map›Paper›PMID 33214610›Full record

ArticleScientific reports2020

Ex vivo rectal explant model reveals potential opposing roles of Natural Killer cells and Marginal Zone-like B cells in HIV-1 infection.

S Abigail Smith, Phillip M Murray, Praveen Kumar Amancha, Cassie G Ackerley, Yi-Juan Hu, Rama R Amara, Colleen F Kelley

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

S Abigail SmithDivision of Infectious Disease, The Hope Clinic of the Emory Vaccine Center, Emory University School of Medicine, Decatur, GA, 30030, USA. ssmit40@emory.edu.
Phillip M MurrayDivision of Infectious Disease, The Hope Clinic of the Emory Vaccine Center, Emory University School of Medicine, Decatur, GA, 30030, USA.
Praveen Kumar AmanchaDivision of Infectious Disease, The Hope Clinic of the Emory Vaccine Center, Emory University School of Medicine, Decatur, GA, 30030, USA.
Cassie G AckerleyDivision of Infectious Disease, The Hope Clinic of the Emory Vaccine Center, Emory University School of Medicine, Decatur, GA, 30030, USA.
Yi-Juan HuDepartent of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, 30322, USA.
Rama R AmaraEmory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.
Colleen F KelleyDivision of Infectious Disease, The Hope Clinic of the Emory Vaccine Center, Emory University School of Medicine, Decatur, GA, 30030, USA. cfkelle@emory.edu.
Emory University · USHOPE Clinic · US

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Ann M Chahroudi, Colleen F Kelley · 2002 to 2026
$74.0M
Research Training in Translational Gastroenterology and HepatologyT32DK108735 · NIDDK · EMORY UNIVERSITY · PI SUBRA KUGATHASAN · 2016 to 2026
$2.6M
Understanding Rectal HIV transmission among At-risk MSM: Age, Intercourse, and Mucosal InjurR01AI128799 · NIAID · EMORY UNIVERSITY · PI KELLEY, COLLEEN F · 2017 to 2020
$2.4M
STI and Implications for HIV Transmission and PreventionR01HD092033 · NICHD · EMORY UNIVERSITY · PI KELLEY, COLLEEN F · 2017 to 2020
$1.9M
Association Tests of Rare Variants Using Sequence Reads without Calling GenotypesR01GM116065 · NIGMS · EMORY UNIVERSITY · PI HU, YIJUAN · 2015 to 2019
$1.5M
Defining the rectal mucosa in MSM at risk of HIV infectionK23AI108335 · NIAID · EMORY UNIVERSITY · PI KELLEY, COLLEEN F · 2013 to 2017
$855k
NIAID NIH HHS K23 AI108335NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI128799NICHD NIH HHS R01 HD092033NIDDK NIH HHS T32 DK108735NIGMS NIH HHS R01 GM116065
6 · The paper itself

Abstract

Our understanding of innate immune responses in human rectal mucosal tissues (RM) and their contributions to promoting or restricting HIV transmission is limited. We defined the RM composition of innate and innate-like cell subsets, including plasmacytoid dendritic cells; CD1c + myeloid DCs; neutrophils; macrophages; natural killer cells (NK); Marginal Zone-like B cells (MZB); γδ T cells; and mucosal-associated invariant T cells in RM from 69 HIV-negative men by flow cytometry. Associations between these cell subsets and HIV-1 replication in ex vivo RM explant challenge experiments revealed an inverse correlation between RM-NK and p24 production, in contrast to a positive association between RM-MZB and HIV replication. Comparison of RM and blood-derived MZB and NK illustrated qualitative and quantitative differences between tissue compartments. Additionally, 22 soluble molecules were measured in a subset of explant cultures (n = 26). Higher production of IL-17A, IFN-γ, IL-10, IP-10, GM-CSF, sFasL, Granzyme A, Granzyme B, Granulysin, and Perforin following infection positively correlated with HIV replication. These data show novel associations between MZB and NK cells and p24 production in RM and underscore the importance of inflammatory cytokines in mucosal HIV infection, demonstrating the likely critical role these innate immune responses play in early mucosal HIV replication in humans.

Indexed as

AdolescentAdultAgedB-Lymphocyte SubsetsCytokinesHIV-1HIV InfectionsHumansImmunity, InnateIntestinal MucosaKiller Cells, NaturalMaleMiddle AgedOrgan Culture TechniquesRectumVirus ReplicationCytokines

Identifiers

PMID33214610
PMCPMC7677325
OpenAlexW3100834646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.