Evidence map›Paper›PMID 33214568›Full record

ArticleScientific data2020

Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source.

Haoyuan Li, Reza Nazari, Brian Abbey, Roberto Alvarez, Andrew Aquila, Kartik Ayyer, Anton Barty, Peter Berntsen, Johan Bielecki, Alberto Pietrini and 40 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

50 authors.

Haoyuan LiSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.ORCID 0000-0003-1845-3748
Reza NazariArizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.
Brian AbbeyARC Centre of Excellence in Advanced Molecular Imaging, La Trobe University, Bundoora, VIC, 3086, Australia.ORCID 0000-0001-6504-0503
Roberto AlvarezArizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.ORCID 0000-0003-1960-849X
Andrew AquilaSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA. aquila@slac.stanford.edu.
Kartik AyyerMax Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761, Hamburg, Germany.ORCID 0000-0002-6881-564X
Anton BartyCenter for Free Electron Laser Science, DESY, Notkestrasse 85, 22607, Hamburg, Germany.
Peter BerntsenARC Centre of Excellence in Advanced Molecular Imaging, La Trobe University, Bundoora, VIC, 3086, Australia.ORCID 0000-0003-2136-4105
Johan BieleckiEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Alberto PietriniLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Maximilian BucherSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.ORCID 0000-0001-7896-473X
Gabriella CariniBrookhaven National Laboratory, Bldg 535B, Upton, NY, 11973, USA.
Henry N ChapmanCenter for Free Electron Laser Science, DESY, Notkestrasse 85, 22607, Hamburg, Germany.ORCID 0000-0002-4655-1743
Alice ContrerasArizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.
Benedikt J DaurerLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Hasan DeMirciStanford PULSE Institute, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.ORCID 0000-0002-9135-5397
Leonie FlűckigerARC Centre of Excellence in Advanced Molecular Imaging, La Trobe University, Bundoora, VIC, 3086, Australia.
Matthias FrankLawrence Livermore National Laboratory, 7000 East Avenue, L-452, Livermore, California, 94550, USA.ORCID 0000-0002-5244-0791
Janos HajduLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Max F HantkeLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Brenda G HogueArizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.
Ahmad HosseinizadehUniversity of Wisconsin Milwaukee, 3135N. Maryland Ave, Milwaukee, Wisconsin, 53211, USA.
Mark S HunterSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.ORCID 0000-0002-0110-7075
H Olof JönssonDepartment of Applied Physics, KTH Royal Institute of Technology, AlbaNova University Center, KTH Royal Institute of Technology, S-106 91, Stockholm, Sweden.
Richard A KirianArizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.ORCID 0000-0001-7197-3086
Ruslan P KurtaEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Duane LohDepartment of Physics, National University of Singapore, 14 Science Drive 4, Blk S1A, Level 2, S1A-02-07, Lee Wee Kheng Building, Singapore, 117557, Singapore.ORCID 0000-0002-8886-510X
Filipe R N C MaiaLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.ORCID 0000-0002-2141-438X
Adrian P MancusoEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Andrew J MorganARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville, Victoria, 3010, Australia. morganaj@unimelb.edu.au.
Matthew McFaddenArizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.
Kerstin MuehligLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Anna MunkeLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.ORCID 0000-0002-5510-2245
Hemanth Kumar Narayana ReddyLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Carl NettelbladLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.ORCID 0000-0003-0458-6902
Abbas OurmazdUniversity of Wisconsin Milwaukee, 3135N. Maryland Ave, Milwaukee, Wisconsin, 53211, USA.ORCID 0000-0001-9946-3889
Max RoseDESY, Photon Science, Notkestrasse 85, 22607, Hamburg, Germany.
Peter SchwanderUniversity of Wisconsin Milwaukee, 3135N. Maryland Ave, Milwaukee, Wisconsin, 53211, USA.ORCID 0000-0003-2350-8838
M Marvin SeibertLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Jonas A SellbergDepartment of Applied Physics, KTH Royal Institute of Technology, AlbaNova University Center, KTH Royal Institute of Technology, S-106 91, Stockholm, Sweden.ORCID 0000-0003-2793-5052
Raymond G SierraSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.
Zhibin SunSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.
Martin SvendaDepartment of Applied Physics, KTH Royal Institute of Technology, AlbaNova University Center, KTH Royal Institute of Technology, S-106 91, Stockholm, Sweden.
Ivan A VartanyantsDESY, Photon Science, Notkestrasse 85, 22607, Hamburg, Germany.ORCID 0000-0002-0340-8234
Peter WalterSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.ORCID 0000-0001-8839-1154
Daniel WestphalLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24, Uppsala, Sweden.
Garth WilliamsBrookhaven National Laboratory, Bldg 535B, Upton, NY, 11973, USA.
P Lourdu XavierSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.ORCID 0000-0001-5132-2999
Chun Hong YoonSLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California, 94025, USA.
Sahba ZaareArizona State University, 1001S. McAllister Avenue, Tempe, AZ, 85287, USA.

Funding

Technology development for biological imaging with x-ray free electron lasersR01GM117342 · NIGMS · LAWRENCE LIVERMORE NATIONAL SECURITY, LLC · PI FRANK, MATTHIAS · 2016 to 2024
$4.8M
EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Skłodowska-Curie Actions (H2020 Excellent Science - Marie Skłodowska-Curie Actions) 701647Helmholtz Association HRSF-0002/18-41-06001National Science Foundation (NSF) 1231306National Science Foundation (NSF) 1551489National Science Foundation (NSF) NSF-1231306NIGMS NIH HHS R01 GM117342U.S. Department of Energy (DOE) DE-SC0002164U.S. Department of Health & Human Services | National Institutes of Health (NIH) 5R01GM117342
6 · The paper itself

Abstract

Single Particle Imaging (SPI) with intense coherent X-ray pulses from X-ray free-electron lasers (XFELs) has the potential to produce molecular structures without the need for crystallization or freezing. Here we present a dataset of 285,944 diffraction patterns from aerosolized Coliphage PR772 virus particles injected into the femtosecond X-ray pulses of the Linac Coherent Light Source (LCLS). Additional exposures with background information are also deposited. The diffraction data were collected at the Atomic, Molecular and Optical Science Instrument (AMO) of the LCLS in 4 experimental beam times during a period of four years. The photon energy was either 1.2 or 1.7 keV and the pulse energy was between 2 and 4 mJ in a focal spot of about 1.3 μm x 1.7 μm full width at half maximum (FWHM). The X-ray laser pulses captured the particles in random orientations. The data offer insight into aerosolised virus particles in the gas phase, contain information relevant to improving experimental parameters, and provide a basis for developing algorithms for image analysis and reconstruction.

Indexed as

ColiphagesLasersParticle AcceleratorsVirionX-Ray Diffraction

Identifiers

PMID33214568
PMCPMC7678860

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.