Evidence map›Paper›PMID 33214551›Full record

ArticleNature communications2020

Proteomic profiling and genome-wide mapping of O-GlcNAc chromatin-associated proteins reveal an O-GlcNAc-regulated genotoxic stress response.

Yubo Liu, Qiushi Chen, Nana Zhang, Keren Zhang, Tongyi Dou, Yu Cao, Yimin Liu, Kun Li, Xinya Hao, Xueqin Xie and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
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  11. H3K4me3 remodeling induced acquired resistance through O-GlcNAc transferase.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. ProteinMetabolites · 2022
    Review
  17. Cells · 2022
    Review
  18. Article
  19. O-GlcNAcylation regulates epidermal growth factor receptor intracellular trafficking and signaling.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Yubo Liu *School of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.ORCID http://orcid.org/0000-0003-0645-0822
Qiushi Chen *Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen, China.ORCID http://orcid.org/0000-0001-8355-2801
Nana ZhangSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.
Keren ZhangClinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen, China.
Tongyi DouSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.
Yu CaoSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.
Yimin LiuSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.
Kun LiSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.
Xinya HaoSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.
Xueqin XieSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.
Wenli LiSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China.
Yan RenClinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen, China. reny@bgi.com.ORCID http://orcid.org/0000-0002-4007-8625
Jianing ZhangSchool of Life and Pharmaceutical Sciences, Dalian University of Technology, Panjin, China. jnzhang@dlut.edu.cn.ORCID http://orcid.org/0000-0002-4514-9197
Dalian University of Technology · CNBGI Group (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

O-GlcNAc modification plays critical roles in regulating the stress response program and cellular homeostasis. However, systematic and multi-omics studies on the O-GlcNAc regulated mechanism have been limited. Here, comprehensive data are obtained by a chemical reporter-based method to survey O-GlcNAc function in human breast cancer cells stimulated with the genotoxic agent adriamycin. We identify 875 genotoxic stress-induced O-GlcNAc chromatin-associated proteins (OCPs), including 88 O-GlcNAc chromatin-associated transcription factors and cofactors (OCTFs), subsequently map their genomic loci, and construct a comprehensive transcriptional reprogramming network. Notably, genotoxicity-induced O-GlcNAc enhances the genome-wide interactions of OCPs with chromatin. The dynamic binding switch of hundreds of OCPs from enhancers to promoters is identified as a crucial feature in the specific transcriptional activation of genes involved in the adaptation of cancer cells to genotoxic stress. The OCTF nuclear factor erythroid 2-related factor-1 (NRF1) is found to be a key response regulator in O-GlcNAc-modulated cellular homeostasis. These results provide a valuable clue suggesting that OCPs act as stress sensors by regulating the expression of various genes to protect cancer cells from genotoxic stress.

Indexed as

AcetylglucosamineCell Line, TumorChromatinChromosome MappingDNA DamageEnhancer Elements, GeneticGene Expression ProfilingGene Expression RegulationGenome-Wide Association StudyGlycosylationHumansNuclear Respiratory Factor 1Promoter Regions, GeneticProtein BindingProteomicsAcetylglucosamineChromatinNRF1 protein, humanNuclear Respiratory Factor 1

Identifiers

PMID33214551
PMCPMC7678849
OpenAlexW3098784155

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.