Evidence map›Paper›PMID 33208749›Full record

ArticleNature communications2020

Genome-enabled discovery of anthraquinone biosynthesis in Senna tora.

Sang-Ho Kang, Ramesh Prasad Pandey, Chang-Muk Lee, Joon-Soo Sim, Jin-Tae Jeong, Beom-Soon Choi, Myunghee Jung, Daniel Ginzburg, Kangmei Zhao, So Youn Won and 14 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 123 citations in OpenAlex.

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  19. Comparative transcriptome analysis and HPLC reveal candidate genes associated with synthesis of bioactive constituents inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 8 institutions in 3 countries.

Sang-Ho Kang *Genomics Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea. hosang93@korea.kr.ORCID http://orcid.org/0000-0002-3795-2780
Ramesh Prasad Pandey *Department of Pharmaceutical Engineering and Biotechnology, Sun Moon University, Asan, 31460, Republic of Korea.
Chang-Muk LeeMetabolic Engineering Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea.
Joon-Soo SimMetabolic Engineering Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea.
Jin-Tae JeongDepartment of Herbal Crop Research, National Institute of Horticultural and Herbal Science, RDA, Eumseong, 55365, Republic of Korea.
Beom-Soon ChoiPhyzen Genomics Institute, Seongnam, 13488, Republic of Korea.
Myunghee JungDepartment of Forest Science, College of Agriculture and Life Science, Seoul National University, Seoul, 08826, Republic of Korea.
Daniel GinzburgDepartment of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-5524-6153
Kangmei ZhaoDepartment of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA.
So Youn WonGenomics Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea.
Tae-Jin OhDepartment of Pharmaceutical Engineering and Biotechnology, Sun Moon University, Asan, 31460, Republic of Korea.
Yeisoo YuPhyzen Genomics Institute, Seongnam, 13488, Republic of Korea.
Nam-Hoon KimPhyzen Genomics Institute, Seongnam, 13488, Republic of Korea.
Ok Ran LeeDepartment of Applied Plant Science, College of Agriculture and Life Science, Chonnam National University, Gwangju, 61186, Republic of Korea.
Tae-Ho LeeGenomics Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea.
Puspalata BashyalDepartment of Pharmaceutical Engineering and Biotechnology, Sun Moon University, Asan, 31460, Republic of Korea.
Tae-Su KimDepartment of Pharmaceutical Engineering and Biotechnology, Sun Moon University, Asan, 31460, Republic of Korea.ORCID http://orcid.org/0000-0002-6402-8139
Woo-Haeng LeeDepartment of Pharmaceutical Engineering and Biotechnology, Sun Moon University, Asan, 31460, Republic of Korea.
Charles HawkinsDepartment of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0003-1284-9047
Chang-Kug KimGenomics Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea.ORCID http://orcid.org/0000-0002-8770-1736
Jung Sun KimGenomics Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea.ORCID http://orcid.org/0000-0001-5209-4481
Byoung Ohg AhnGenomics Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea.
Seung Yon RheeDepartment of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA. srhee@carnegiescience.edu.ORCID http://orcid.org/0000-0002-7572-4762
Jae Kyung SohngDepartment of Pharmaceutical Engineering and Biotechnology, Sun Moon University, Asan, 31460, Republic of Korea. sohng@sunmoon.ac.kr.ORCID http://orcid.org/0000-0003-1583-5046
National Institute of Agricultural Science and Technology · KRSun Moon University · KRCarnegie Institution for Science · USPhyzen (South Korea) · KRChonnam National University · KRNational Academy of Agricultural Sciences · INRural Development Administration · KRSeoul National University · KR

Funding

An integrated pipeline for accelerated plant natural product discoveryU01GM110699 · NIGMS · STANFORD UNIVERSITY · PI SMOLKE, CHRISTINA D · 2015 to 2019
$4.5M
NIGMS NIH HHS U01 GM110699
6 · The paper itself

Abstract

Senna tora is a widely used medicinal plant. Its health benefits have been attributed to the large quantity of anthraquinones, but how they are made in plants remains a mystery. To identify the genes responsible for plant anthraquinone biosynthesis, we reveal the genome sequence of S. tora at the chromosome level with 526 Mb (96%) assembled into 13 chromosomes. Comparison among related plant species shows that a chalcone synthase-like (CHS-L) gene family has lineage-specifically and rapidly expanded in S. tora. Combining genomics, transcriptomics, metabolomics, and biochemistry, we identify a CHS-L gene contributing to the biosynthesis of anthraquinones. The S. tora reference genome will accelerate the discovery of biologically active anthraquinone biosynthesis pathways in medicinal plants.

Indexed as

Genome, PlantAnthraquinonesBiosynthetic PathwaysChromosomes, PlantPlant ProteinsSenna PlantAnthraquinonesPlant Proteins

Identifiers

PMID33208749
PMCPMC7674472
OpenAlexW3099492932

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.