Evidence map›Paper›PMID 33208736›Full record

ArticleNature communications2020

Architecture of a SARS-CoV-2 mini replication and transcription complex.

Liming Yan, Ying Zhang, Ji Ge, Litao Zheng, Yan Gao, Tao Wang, Zhihui Jia, Haofeng Wang, Yucen Huang, Mingyu Li and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 149 papers.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed
3.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed, 218 citations in OpenAlex.

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89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Liming YanMOE Key Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing, China.
Ying ZhangSchool of Life Sciences, Tsinghua University, Beijing, China.
Ji GeSchool of Life Sciences, Tsinghua University, Beijing, China.
Litao ZhengSchool of Life Sciences, Tsinghua University, Beijing, China.
Yan GaoMOE Key Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing, China.
Tao WangMOE Key Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing, China.
Zhihui JiaResearch Centre of Microbiome, Department of Medical Microbiology and Parasitology, School of Basic Medical Sciences, Capital Medical University, Beijing, China.
Haofeng WangShanghai Institute for Advanced Immunochemical Studies and School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Yucen HuangMOE Key Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing, China.
Mingyu LiMOE Key Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing, China.
Quan WangShanghai Institute for Advanced Immunochemical Studies and School of Life Science and Technology, ShanghaiTech University, Shanghai, China.ORCID 0000-0001-5148-5210
Zihe RaoMOE Key Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing, China. raozh@tsinghua.edu.cn.
Zhiyong LouMOE Key Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing, China. louzy@mail.tsinghua.edu.cn.ORCID 0000-0003-2728-881X
Tsinghua University · CNShanghaiTech University · CNCapital Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Non-structural proteins (nsp) constitute the SARS-CoV-2 replication and transcription complex (RTC) to play a pivotal role in the virus life cycle. Here we determine the atomic structure of a SARS-CoV-2 mini RTC, assembled by viral RNA-dependent RNA polymerase (RdRp, nsp12) with a template-primer RNA, nsp7 and nsp8, and two helicase molecules (nsp13-1 and nsp13-2), by cryo-electron microscopy. Two groups of mini RTCs with different conformations of nsp13-1 are identified. In both of them, nsp13-1 stabilizes overall architecture of the mini RTC by contacting with nsp13-2, which anchors the 5'-extension of RNA template, as well as interacting with nsp7-nsp8-nsp12-RNA. Orientation shifts of nsp13-1 results in its variable interactions with other components in two forms of mini RTC. The mutations on nsp13-1:nsp12 and nsp13-1:nsp13-2 interfaces prohibit the enhancement of helicase activity achieved by mini RTCs. These results provide an insight into how helicase couples with polymerase to facilitate its function in virus replication and transcription.

Indexed as

Virus ReplicationBetacoronavirusBinding SitesCryoelectron MicroscopyHumansMethyltransferasesModels, MolecularMutationProtein BindingProtein ConformationRNA HelicasesRNA, ViralSARS-CoV-2Structure-Activity RelationshipTranscription, GeneticViral Nonstructural ProteinsMethyltransferasesNsp13 protein, SARS-CoVRNA HelicasesRNA, ViralViral Nonstructural Proteins

Identifiers

PMID33208736
PMCPMC7675986
OpenAlexW3095556560

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.