Evidence map›Paper›PMID 33207206›Full record

ArticleCell reports2020

Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma.

Marian F Laughery, Alexander J Brown, Kaitlynne A Bohm, Smitha Sivapragasam, Haley S Morris, Mila Tchmola, Angelica D Washington, Debra Mitchell, Stephen Mather, Ewa P Malc and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  9. Review
  10. Article
  11. Assessment of the Influence of UVR in Cutaneous Melanoma.Photodermatology, photoimmunology & photomedicine · 2025
    Review
  12. Review
  13. Review
  14. Nevi and Melanoma.Hematology/oncology clinics of North America · 2024
    Review
  15. The Surprising Diversity of UV-Induced Mutations.Advanced genetics (Hoboken, N.J.) · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Marian F LaugherySchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Alexander J BrownSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Kaitlynne A BohmSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Smitha SivapragasamSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Haley S MorrisSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Mila TchmolaSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Angelica D WashingtonSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Debra MitchellSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Stephen MatherSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Ewa P MalcDepartment of Genetics, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA.
Piotr A MieczkowskiDepartment of Genetics, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA.
Steven A RobertsSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA; Center for Reproductive Biology, Washington State University, Pullman, WA 99164, USA. Electronic address: steven.roberts2@wsu.edu.
John J WyrickSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA; Center for Reproductive Biology, Washington State University, Pullman, WA 99164, USA. Electronic address: jwyrick@wsu.edu.
Washington State University · USUniversity of North Carolina at Chapel Hill · US

Funding

Regulation of DNA Excision Repair in ChromatinR01ES028698 · NIEHS · WASHINGTON STATE UNIVERSITY · PI John J Wyrick · 2018 to 2026
$2.7M
UV damage stimulation by ETS transcription factors in skin cancerR21ES029655 · NIEHS · WASHINGTON STATE UNIVERSITY · PI WYRICK, JOHN J · 2019 to 2020
$435k
Genome-wide analysis of UV damage formation, repair, and mutagenesisR21ES027937 · NIEHS · WASHINGTON STATE UNIVERSITY · PI ROBERTS, STEVEN A, WYRICK, JOHN J · 2017 to 2018
$419k
NIEHS NIH HHS R01 ES028698NIEHS NIH HHS R21 ES027937NIEHS NIH HHS R21 ES029655
6 · The paper itself

Abstract

Somatic mutations in skin cancers and other ultraviolet (UV)-exposed cells are typified by C>T and CC>TT substitutions at dipyrimidine sequences; however, many oncogenic "driver" mutations in melanoma do not fit this UV signature. Here, we use genome sequencing to characterize mutations in yeast repeatedly irradiated with UV light. Analysis of ~50,000 UV-induced mutations reveals abundant non-canonical mutations, including T>C, T>A, and AC>TT substitutions. These mutations display transcriptional asymmetry that is modulated by nucleotide excision repair (NER), indicating that they are caused by UV photoproducts. Using a sequencing method called UV DNA endonuclease sequencing (UVDE-seq), we confirm the existence of an atypical thymine-adenine photoproduct likely responsible for UV-induced T>A substitutions. Similar non-canonical mutations are present in skin cancers, which also display transcriptional asymmetry and dependence on NER. These include multiple driver mutations, most prominently the recurrent BRAF V600E and V600K substitutions, suggesting that mutations arising from rare, atypical UV photoproducts may play a role in melanomagenesis.

Indexed as

Base SequenceDNA DamageDNA RepairMelanomaMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Analysis, DNAUltraviolet RaysSaccharomyces cerevisiae ProteinsBRAFNRASskin cancerthymine-adenine photoproducttranscriptional asymmetryUV damageUV mutagenesis

Identifiers

PMID33207206
PMCPMC7709870
OpenAlexW3103379966

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.