Evidence map›Paper›PMID 33206719›Full record

ArticlePloS one2020

Clinical and molecular characterization of COVID-19 hospitalized patients.

Elisa Benetti, Annarita Giliberti, Arianna Emiliozzi, Floriana Valentino, Laura Bergantini, Chiara Fallerini, Federico Anedda, Sara Amitrano, Edoardo Conticini, Rossella Tita and 13 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
1.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it, 39 citations in OpenAlex.

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  13. Severe COVID-19 in Hospitalized Carriers of SingleJournal of personalized medicine · 2021
    Article
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  16. The Role of Immunogenetics in COVID-19.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 2 institutions in 1 country.

Elisa BenettiDepartment of Medical Biotechnologies, University of Siena, Siena, Italy.
Annarita GilibertiMedical Genetics, University of Siena, Siena, Italy.
Arianna EmiliozziDepartment of Medical Biotechnologies, University of Siena, Siena, Italy.
Floriana ValentinoMedical Genetics, University of Siena, Siena, Italy.
Laura BergantiniUnit of Respiratory Diseases and Lung Transplantation, Department of Internal and Specialist Medicine, University of Siena, Siena, Italy.
Chiara FalleriniMedical Genetics, University of Siena, Siena, Italy.
Federico AneddaDepartment of Emergency and Urgency, Medicine, Surgery and Neurosciences, Unit of Intensive Care Medicine, Siena University Hospital, Siena, Italy.
Sara AmitranoGenetica Medica, Azienda Ospedaliera Universitaria Senese, Senese, Italy.
Edoardo ConticiniRheumatology Unit, Department of Medicine, Surgery and Neurosciences, University of Siena, Policlinico Le Scotte, Siena, Italy.
Rossella TitaGenetica Medica, Azienda Ospedaliera Universitaria Senese, Senese, Italy.
Miriana d'AlessandroUnit of Respiratory Diseases and Lung Transplantation, Department of Internal and Specialist Medicine, University of Siena, Siena, Italy.
Francesca FavaMedical Genetics, University of Siena, Siena, Italy.
Simona MarcantonioDepartment of Emergency and Urgency, Medicine, Surgery and Neurosciences, Unit of Intensive Care Medicine, Siena University Hospital, Siena, Italy.
Margherita BaldassarriMedical Genetics, University of Siena, Siena, Italy.
Mirella BruttiniMedical Genetics, University of Siena, Siena, Italy.
Maria Antonietta MazzeiDepartment of Medical, Surgical and Neuro Sciences and Radiological Sciences, Unit of Diagnostic Imaging, University of Siena, Azienda Ospedaliera Universitaria Senese, Senese, Italy.
Francesca MontagnaniDepartment of Medical Biotechnologies, University of Siena, Siena, Italy.ORCID 0000-0002-2267-1337
Marco MandalàOtolaryngology Unit, University of Siena, Siena, Italy.
Elena BargagliUnit of Respiratory Diseases and Lung Transplantation, Department of Internal and Specialist Medicine, University of Siena, Siena, Italy.
Simone FuriniDepartment of Medical Biotechnologies, University of Siena, Siena, Italy.
GEN-COVID Multicenter Study
Alessandra RenieriMedical Genetics, University of Siena, Siena, Italy.ORCID 0000-0002-0846-9220
Francesca MariMedical Genetics, University of Siena, Siena, Italy.
University of Siena · ITAzienda Ospedaliera Universitaria Senese · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clinical and molecular characterization by Whole Exome Sequencing (WES) is reported in 35 COVID-19 patients attending the University Hospital in Siena, Italy, from April 7 to May 7, 2020. Eighty percent of patients required respiratory assistance, half of them being on mechanical ventilation. Fiftyone percent had hepatic involvement and hyposmia was ascertained in 3 patients. Searching for common genes by collapsing methods against 150 WES of controls of the Italian population failed to give straightforward statistically significant results with the exception of two genes. This result is not unexpected since we are facing the most challenging common disorder triggered by environmental factors with a strong underlying heritability (50%). The lesson learned from Autism-Spectrum-Disorders prompted us to re-analyse the cohort treating each patient as an independent case, following a Mendelian-like model. We identified for each patient an average of 2.5 pathogenic mutations involved in virus infection susceptibility and pinpointing to one or more rare disorder(s). To our knowledge, this is the first report on WES and COVID-19. Our results suggest a combined model for COVID-19 susceptibility with a number of common susceptibility genes which represent the favorite background in which additional host private mutations may determine disease progression.

Indexed as

Exome SequencingAgedCOVID-19FemaleHospitalizationHumansMaleMiddle AgedPrognosis

Identifiers

PMID33206719
PMCPMC7673557
OpenAlexW3103965653

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.