Evidence map›Paper›PMID 33206643›Full record

ArticlePLoS neglected tropical diseases2020

Comparative analysis of virulence determinants, phylogroups, and antibiotic susceptibility patterns of typical versus atypical Enteroaggregative E. coli in India.

Vinay Modgil, Jaspreet Mahindroo, Chandradeo Narayan, Manmohit Kalia, Md Yousuf, Varun Shahi, Meenakshi Koundal, Pankaj Chaudhary, Ruby Jain, Kawaljeet Singh Sandha and 9 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

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  5. Prevalence of CTX-M types among ESBL-producing pathogenicFood science and biotechnology · 2024
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  9. Article
  10. A Mini-Review of EnteroaggregativePolish journal of microbiology · 2023
    Review
  11. Article
  12. Article
  13. Are non-lactose-fermentingAccess microbiology · 2023
    Article
  14. Phenotypic and genotypic characteristics ofFrontiers in public health · 2023
    Article
  15. Prevalence of Virulence Genes AmongJournal of veterinary research · 2022
    Article
  16. A Novel Adult Murine Model of Typical EnteroaggregativeFrontiers in cellular and infection microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Vinay ModgilDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.
Jaspreet MahindrooDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.ORCID 0000-0001-8456-5874
Chandradeo NarayanDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.
Manmohit KaliaDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.
Md YousufDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.ORCID 0000-0002-0845-6091
Varun ShahiDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.
Meenakshi KoundalDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.
Pankaj ChaudharyDepartment of Pediatrics Medicine, Postgraduate Institute of Medical Education and Research, Chandigarh (PGIMER), India.
Ruby JainCivil Hospital Manimajra, Chandigarh, India.
Kawaljeet Singh SandhaCivil Hospital Manimajra, Chandigarh, India.
Seema TanwarCivil Hospital Ambala, Haryana, India.
Pratima GuptaDepartment of Microbiology, All India Institute of Medical Sciences (AIIMS), Rishikesh, Uttarakhand, India.
Kamlesh ThakurDepartment of Microbiology, Dr. Rajendra Prasad Government Medical College Kangra (RPGMC), Himachal Pradesh, India.
Digvijay SinghDepartment of Microbiology, Indira Gandhi Medical college (IGMC), Shimla, Himachal Pradesh, India.
Neha GautamDepartment of Microbiology, Indira Gandhi Medical college (IGMC), Shimla, Himachal Pradesh, India.ORCID 0000-0001-6790-8142
Manish KakkarPublic Health Foundation of India, Delhi, India.
Bhavneet BhartiDepartment of Pediatrics Medicine, Postgraduate Institute of Medical Education and Research, Chandigarh (PGIMER), India.
Balvinder MohanDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.ORCID 0000-0002-1953-2635
Neelam TanejaDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India.ORCID 0000-0003-1198-6138
Post Graduate Institute of Medical Education and Research · INIndira Gandhi Medical College · INAll India Institute of Medical Sciences Rishikesh · INDr. Rajendra Prasad Government Medical College · INGovernment of Haryana · INPublic Health Foundation of India · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enteroaggregative Escherichia coli (EAEC) is an evolving enteric pathogen that causes acute and chronic diarrhea in developed and industrialized nations in children. EAEC epidemiology and the importance of atypical EAEC (aEAEC) isolation in childhood diarrhea are not well documented in the Indian setting. A comparative analysis was undertaken to evaluate virulence, phylogeny, and antibiotic sensitivity among typical tEAEC versus aEAEC. A total of 171 EAEC isolates were extracted from a broad surveillance sample of diarrheal (N = 1210) and healthy children (N = 550) across North India. Polymerase chain reaction (PCR) for the aggR gene (master regulator gene) was conducted to differentiate tEAEC and aEAEC. For 21 virulence genes, we used multiplex PCR to classify possible virulence factors among these strains. Phylogenetic classes were identified by a multiplex PCR for chuA, yjaA, and a cryptic DNA fragment, TspE4C2. Antibiotic susceptibility was conducted by the disc diffusion method as per CLSI guidelines. EAEC was associated with moderate to severe diarrhea in children. The prevalence of EAEC infection (11.4%) was higher than any other DEC group (p = 0.002). tEAEC occurrence in the diarrheal group was higher than in the control group (p = 0.0001). tEAEC strain harbored more virulence genes than aEAEC. astA, aap, and aggR genes were most frequently found in the EAEC from the diarrheal population. Within tEAEC, this gene combination was present in more than 50% of strains. Also, 75.8% of EAEC strains were multidrug-resistant (MDR). Phylogroup D (43.9%) and B1 (39.4%) were most prevalent in the diarrheal and control group, respectively. Genetic analysis revealed EAEC variability; the comparison of tEAEC and aEAEC allowed us to better understand the EAEC virulence repertoire. Further microbiological and epidemiological research is required to examine the pathogenicity of not only typical but also atypical EAEC.

Indexed as

Anti-Bacterial AgentsBacterial Outer Membrane ProteinsChildChild, PreschoolDiarrheaDisk Diffusion Antimicrobial TestsDNA, BacterialEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsFecesFemaleHumansIndiaInfantMaleAAP protein, E coliAggR protein, E coliAnti-Bacterial AgentsBacterial Outer Membrane ProteinsChuA protein, E coliDNA, BacterialEscherichia coli ProteinsReceptors, Cell SurfaceTrans-ActivatorsVirulence Factors

Identifiers

PMID33206643
PMCPMC7673547
OpenAlexW3100633815

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.