Evidence map›Paper›PMID 33205023›Full record

ArticleiScience2020

Glycan Positioning Impacts HIV-1 Env Glycan-Shield Density, Function, and Recognition by Antibodies.

Qing Wei, Audra A Hargett, Barbora Knoppova, Alexandra Duverger, Reda Rawi, Chen-Hsiang Shen, S Katie Farney, Stacy Hall, Rhubell Brown, Brandon F Keele and 9 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Qing WeiDepartment of Microbiology, University of Alabama at Birmingham, 845 19th Street S, Birmingham, AL 35294, USA.
Audra A HargettDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, AL, USA.
Barbora KnoppovaDepartment of Microbiology, University of Alabama at Birmingham, 845 19th Street S, Birmingham, AL 35294, USA.
Alexandra DuvergerDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Reda RawiVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Chen-Hsiang ShenVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
S Katie FarneyVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Stacy HallDepartment of Microbiology, University of Alabama at Birmingham, 845 19th Street S, Birmingham, AL 35294, USA.
Rhubell BrownDepartment of Microbiology, University of Alabama at Birmingham, 845 19th Street S, Birmingham, AL 35294, USA.
Brandon F KeeleAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Sonya L HeathDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Michael S SaagDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Olaf KutschDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Gwo-Yu ChuangVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Peter D KwongVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Zina MoldoveanuDepartment of Microbiology, University of Alabama at Birmingham, 845 19th Street S, Birmingham, AL 35294, USA.
Milan RaskaDepartment of Microbiology, University of Alabama at Birmingham, 845 19th Street S, Birmingham, AL 35294, USA.
Matthew B RenfrowDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, AL, USA.
Jan NovakDepartment of Microbiology, University of Alabama at Birmingham, 845 19th Street S, Birmingham, AL 35294, USA.
University of Alabama at Birmingham · USNational Institute of Allergy and Infectious Diseases · USNational Institutes of Health · USFrederick National Laboratory for Cancer Research · US

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
ZINC DIETARY ALTERATIONS OF CADMIUM INDUCED HEPATIC TOXICITY IN RATSS06GM008111 · NIGMS · FLORIDA AGRICULTURAL AND MECHANICAL UNIV · PI REAMS, ROMONIA RENEE · 1989 to 2008
$9.1M
Defining the impact of glycan-microdomains of the HIV-1 Env glycan shieldR01AI162236 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NOVAK, JAN, RENFROW, MATTHEW B · 2021 to 2025
$3.6M
Analytical tools for the analysis of clustered O-glycans in clinical samplesR01GM098539 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI RENFROW, MATTHEW B · 2011 to 2019
$2.7M
Overcoming HIV-1 transcriptional latency in unresponsive CD4 T cellsR01AI122842 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2017 to 2020
$2.6M
Identification of drugs that induce terminal transcriptional silencing of latent HIV-1 infectionR33AI133679 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2020 to 2021
$1.4M
Overcoming HIV-1 transcriptional latency in unresponsive CD4 T cellsR56AI122842 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KUTSCH, OLAF · 2016 to 2016
$455k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENIAID NIH HHS P30 AI027767NIAID NIH HHS R01 AI122842NIAID NIH HHS R01 AI162236NIAID NIH HHS R33 AI133679NIAID NIH HHS R56 AI122842NIGMS NIH HHS R01 GM098539NIGMS NIH HHS S06 GM008111
6 · The paper itself

Abstract

HIV-1 envelope (Env) N-glycosylation impact virus-cell entry and immune evasion. How each glycan interacts to shape the Env-protein-sugar complex and affects Env function is not well understood. Here, analysis of two Env variants from the same donor, with differing functional characteristics and N-glycosylation-site composition, revealed that changes to key N-glycosylation sites affected the Env structure at distant locations and had a ripple effect on Env-wide glycan processing, virus infectivity, antibody recognition, and virus neutralization. Specifically, the N262 glycan, although not in the CD4-binding site, modulated Env binding to the CD4 receptor, affected Env recognition by several glycan-dependent neutralizing antibodies, and altered site-specific glycosylation heterogeneity, with, for example, N448 displaying limited glycan processing. Molecular-dynamic simulations visualized differences in glycan density and how specific oligosaccharide positions can move to compensate for a glycan loss. This study demonstrates how changes in individual glycans can alter molecular dynamics, processing, and function of the Env-glycan shield.

Indexed as

BiochemistryBiological SciencesGlycobiologyMicrobiologyVirology

Identifiers

PMID33205023
PMCPMC7649354
OpenAlexW3094080287

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.