Evidence map›Paper›PMID 33203912›Full record

ArticleNature communications2020

Molecular variation in a functionally divergent homolog of FCA regulates flowering time in Arabidopsis thaliana.

Yunhe Wang, Zhen Tao, Wanyi Wang, Daniele Filiault, Chunhong Qiu, Chuanhong Wang, Hui Wang, Shamsur Rehman, Jian Shi, Yan Zhang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 52 citations in OpenAlex.

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  12. Genome-wide association study reveals loci and candidate genes of flowering time in jute (Molecular breeding : new strategies in plant improvement · 2023
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  18. Genome and pan-genome assembly of asparagus bean (Frontiers in plant science · 2022
    Article
  19. Article
  20. Expression GWAS ofFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Yunhe WangThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Zhen TaoThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Wanyi WangThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Daniele FiliaultGregor Mendel Institute, Austrian Academy of Sciences, Vienna BioCenter, 1030, Vienna, Austria.
Chunhong QiuThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Chuanhong WangThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Hui WangThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Shamsur RehmanThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Jian ShiThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Yan ZhangThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Peijin LiThe National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. peijin.li@ahau.edu.cn.ORCID 0000-0003-1579-7553
Anhui Agricultural University · CNGregor Mendel Institute of Molecular Plant Biology · AT

Funding

Biotechnology and Biological Sciences Research Council BB/I007857/1Biotechnology and Biological Sciences Research Council BB/J004588/1
6 · The paper itself

Abstract

The identification and functional characterization of natural variants in plants are essential for understanding phenotypic adaptation. Here we identify a molecular variation in At2g47310 that contributes to the natural variation in flowering time in Arabidopsis thaliana accessions. This gene, which we term SISTER of FCA (SSF), functions in an antagonistic manner to its close homolog FCA. Genome-wide association analysis screens two major haplotypes of SSF associated with the natural variation in FLC expression, and a single polymorphism, SSF-N414D, is identified as a main contributor. The SSF414N protein variant interacts more strongly with CUL1, a component of the E3 ubiquitination complex, than the SSF414D form, mediating differences in SSF protein degradation and FLC expression. FCA and SSF appear to have arisen through gene duplication after dicot-monocot divergence, with the SSF-N414D polymorphism emerging relatively recently within A. thaliana. This work provides a good example for deciphering the functional importance of natural polymorphisms in different organisms.

Indexed as

Polymorphism, GeneticAdaptation, PhysiologicalArabidopsisArabidopsis ProteinsChromatinCullin ProteinsFlowersGene DuplicationGene Expression Regulation, PlantGenome-Wide Association StudyMADS Domain ProteinsPhylogeographyPlants, Genetically ModifiedProtein StabilityRNA-Binding ProteinsArabidopsis ProteinsAT2G47310 protein, ArabidopsisAt5g10140 protein, ArabidopsisChromatinCullin 1Cullin ProteinsFlowering time control protein FCA, ArabidopsisMADS Domain ProteinsRNA-Binding Proteins

Identifiers

PMID33203912
PMCPMC7673134
OpenAlexW3106093771

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.