Evidence map›Paper›PMID 33203081›Full record

ArticleMicroorganisms2020

Genetic Adaptation of Coxsackievirus B1 during Persistent Infection in Pancreatic Cells.

Anni Honkimaa, Bryn Kimura, Amir-Babak Sioofy-Khojine, Jake Lin, Jutta Laiho, Sami Oikarinen, Heikki Hyöty

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Anni HonkimaaFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.
Bryn KimuraFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.ORCID 0000-0002-6072-8883
Amir-Babak Sioofy-KhojineFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.ORCID 0000-0001-5538-5153
Jake LinFinnish Institute of Molecular Medicine, FIMM, University of Helsinki, 00290 Helsinki, Finland.ORCID 0000-0001-9928-1663
Jutta LaihoFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.
Sami OikarinenFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.ORCID 0000-0003-3901-6774
Heikki HyötyFaculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland.
Tampere University · FIUniversity of Helsinki · FI

Funding

Academy of Finland 288671Juvenile Diabetes Research Foundation United States of America 000Novo Nordisk 000Reino Lahtikari 000Sigrid Juséliuksen Säätiö 000
6 · The paper itself

Abstract

Coxsackie B (CVB) viruses have been associated with type 1 diabetes. We have recently observed that CVB1 was linked to the initiation of the autoimmune process leading to type 1 diabetes in Finnish children. Viral persistency in the pancreas is currently considered as one possible mechanism. In the current study persistent infection was established in pancreatic ductal and beta cell lines (PANC-1 and 1.1B4) using four different CVB1 strains, including the prototype strain and three clinical isolates. We sequenced 5' untranslated region (UTR) and regions coding for structural and non-structural proteins and the second single open reading frame (ORF) protein of all persisting CVB1 strains using next generation sequencing to identify mutations that are common for all of these strains. One mutation, K257R in VP1, was found from all persisting CVB1 strains. The mutations were mainly accumulated in viral structural proteins, especially at BC, DE, EF loops and C-terminus of viral capsid protein 1 (VP1), the puff region of VP2, the knob region of VP3 and infection-enhancing epitope of VP4. This showed that the capsid region of the viruses sustains various changes during persistency some of which could be hallmark(s) of persistency.

Indexed as

cell models of persistencycoxsackievirus B1enterovirusnext generation sequencingpersistent infectiontype 1 diabetesvirus adaptation

Identifiers

PMID33203081
PMCPMC7697981
OpenAlexW3102694257

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.