Evidence map›Paper›PMID 33202554›Full record

ArticleViruses2020

Biological Characteristics and Patterns of Codon Usage Evolution for the African Genotype Zika Virus.

Martin Faye, Naimah Zein, Cheikh Loucoubar, Manfred Weidmann, Ousmane Faye, Marielton Dos Passos Cunha, Paolo Marinho de Andrade Zanotto, Amadou Alpha Sall, Oumar Faye

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. African ZIKV lineage fails to sustain infectivity in an in vitro mimetic urban cycle.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Martin FayeVirology Department Institut Pasteur of Dakar, Dakar 220, Senegal.ORCID 0000-0003-3207-6344
Naimah ZeinInstitute of Genetics and Molecular and Cellular Biology, CEDEX, 10142/67404 Illkirch, France.
Cheikh LoucoubarBioinformatics, Biostatistics and Modeling group, Institut Pasteur of Dakar, Dakar 220, Senegal.
Manfred WeidmannInstitute of Aquaculture University of Stirling, Stirling FK9 4LA, Scotland, UK.ORCID 0000-0002-7063-7491
Ousmane FayeVirology Department Institut Pasteur of Dakar, Dakar 220, Senegal.
Marielton Dos Passos CunhaMicrobiology Department, Institute of Biomedical Sciences, University of São Paulo (USP), São Paulo, SP 05508020, Brazil.ORCID 0000-0002-2102-631X
Paolo Marinho de Andrade ZanottoMicrobiology Department, Institute of Biomedical Sciences, University of São Paulo (USP), São Paulo, SP 05508020, Brazil.
Amadou Alpha SallVirology Department Institut Pasteur of Dakar, Dakar 220, Senegal.
Oumar FayeVirology Department Institut Pasteur of Dakar, Dakar 220, Senegal.
Institut Pasteur de Dakar · SNUniversidade de São Paulo · BRInstitut de génétique et de biologie moléculaire et cellulaire · FRUniversity of Stirling · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated temporal trends of codon usage changes for different host species to determine their importance in Zika virus (ZIKV) evolution. Viral spillover resulting from the potential of codon adaptation to host genome was also assessed for the African genotype ZIKV in comparison to the Asian genotype. To improve our understanding on its zoonotic maintenance, we evaluated in vitro the biological properties of the African genotype ZIKV in vertebrate and mosquito cell lines. Analyses were performed in comparison to Yellow fever virus (YFV). Despite significantly lower codon adaptation index trends than YFV, ZIKV showed evident codon adaptation to vertebrate hosts, particularly for the green African monkey

Indexed as

Codon UsageEvolution, MolecularGenome, ViralAdaptation, PhysiologicalAedesAfricaAnimalsCell LineChlorocebus aethiopsDatabases, GeneticGenotypeHost-Pathogen InteractionsHumansPrincipal Component AnalysisZika VirusAfrican genotype Zika virusbiological characteristicscodon adaption dynamics

Identifiers

PMID33202554
PMCPMC7696518
OpenAlexW3100130106

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.