Evidence map›Paper›PMID 33200197›Full record

ArticleCarcinogenesis2021

Genomic profiling of multifocal intrahepatic cholangiocarcinoma reveals intraindividual concordance of genetic alterations.

Sung Hwan Lee, Eve B Simoneau, Tatiana Karpinets, P Andrew Futreal, Jianjun Zhang, Milind Javle, Jianhua Zhang, Jean-Nicolas Vauthey, Ju-Seog Lee, Jeannelyn S Estrella and 1 more

Open access · greenAbstract read
In one paragraph

Article in Carcinogenesis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Current challenges to underpinning the genetic basis for cholangiocarcinoma.Expert review of gastroenterology & hepatology · 2021
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Sung Hwan LeeDepartment of Surgery, CHA Bundang Medical Center, CHA University, Seongnam, Republic of Korea.
Eve B SimoneauDepartment of Surgical Oncology, Houston, TX, USA.
Tatiana KarpinetsDepartment of Genomic Medicine, Houston, TX, USA.
P Andrew FutrealDepartment of Genomic Medicine, Houston, TX, USA.
Jianjun ZhangDepartment of Thoracic/Head and Neck Medical Oncology, Houston, TX, USA.
Milind JavleDepartment of Gastrointestinal Medical Oncology, Houston, TX, USA.
Jianhua ZhangDepartment of Genomic Medicine, Houston, TX, USA.
Jean-Nicolas VautheyDepartment of Surgical Oncology, Houston, TX, USA.
Ju-Seog LeeDepartment of Systems Biology, Houston, TX, USA.
Jeannelyn S EstrellaDepartment of Anatomic Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Yun Shin ChunDepartment of Surgical Oncology, Houston, TX, USA.
Anesthesiology and Surgical Oncology Research Group · USGenomic Health (United States) · USTexas Medical Center · USCenter for Systems Biology · USCHA University Bundang Medical Center · KRThe University of Texas MD Anderson Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
PEA15 IN DEVELOPMENT OF LIVER CANCER AND ITS THERAPEUTIC IMPLICATIONR01CA237327 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LEE, JU-SEOG · 2020 to 2024
$1.8M
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA237327
6 · The paper itself

Abstract

In multifocal intrahepatic cholangiocarcinoma (IHC), intrahepatic metastases (IM) represent a contraindication to surgical resection, whereas satellite nodules (SN) do not. However, no consensus criteria exist to distinguish IM from SN. The purpose of this study was to determine genetic alterations and clonal relationships in surgically resected multifocal IHC. Next-generation sequencing of 34 spatially separated IHC tumors was performed using a targeted panel of 201 cancer-associated genes. Proposed definitions in the literature were applied of SN located in the same liver segment and ≤2 cm from the primary tumor; and IM located in a different liver segment and/or >2 cm from the primary tumor. Somatic point mutations concordant across tumors from individual patients included BAP1, SMARCA4 and IDH1. Small insertions and deletions (indels) present at the same genome positions among all tumors from individuals included indels in DNA repair genes, CHEK1, ERCC5, ATR and MSH6. Copy number alterations were also similar between all tumors in each patient. In this cohort of multifocal IHC, genomic profiles were concordant across all tumors in each patient, suggesting a common progenitor cell origin, regardless of the location of tumors in the liver. The decision to perform surgery should not be based upon a perceived distinction between IM and SN.

Indexed as

Bile Duct NeoplasmsBile Ducts, IntrahepaticBiomarkers, TumorCholangiocarcinomaClinical Decision-MakingContraindications, ProcedureDiagnosis, DifferentialDNA Copy Number VariationsDNA Mutational AnalysisFollow-Up StudiesHepatectomyHigh-Throughput Nucleotide SequencingHumansINDEL MutationLiverLiver NeoplasmsBiomarkers, Tumor

Identifiers

PMID33200197
PMCPMC8052956
OpenAlexW3105222744

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.