Evidence map›Paper›PMID 33199913›Full record

ArticleNature chemical biology2021

Dynamics of an LPS translocon induced by substrate and an antimicrobial peptide.

Francesco Fiorentino, Joshua B Sauer, Xingyu Qiu, Robin A Corey, C Keith Cassidy, Benjamin Mynors-Wallis, Shahid Mehmood, Jani R Bolla, Phillip J Stansfeld, Carol V Robinson

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  10. Mini reviews in medicinal chemistry · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Francesco FiorentinoDepartment of Chemistry, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-3550-1860
Joshua B SauerDepartment of Chemistry, University of Oxford, Oxford, UK.
Xingyu QiuDepartment of Chemistry, University of Oxford, Oxford, UK.
Robin A CoreyDepartment of Biochemistry, University of Oxford, Oxford, UK.
C Keith CassidyDepartment of Biochemistry, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-8106-1187
Benjamin Mynors-WallisDepartment of Biochemistry, University of Oxford, Oxford, UK.
Shahid MehmoodDepartment of Chemistry, University of Oxford, Oxford, UK.
Jani R BollaDepartment of Chemistry, University of Oxford, Oxford, UK. jani.bolla@chem.ox.ac.uk.ORCID http://orcid.org/0000-0003-4346-182X
Phillip J StansfeldDepartment of Biochemistry, University of Oxford, Oxford, UK. phillip.stansfeld@warwick.ac.uk.ORCID http://orcid.org/0000-0001-8800-7669
Carol V RobinsonDepartment of Chemistry, University of Oxford, Oxford, UK. carol.robinson@chem.ox.ac.uk.ORCID http://orcid.org/0000-0001-7829-5505
University of Oxford · GBThe Francis Crick Institute · GBUniversity of Warwick · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M011224/1Biotechnology and Biological Sciences Research Council BB/P01948X/1Biotechnology and Biological Sciences Research Council BB/R002517/1Biotechnology and Biological Sciences Research Council BB/S003339/1European Research Council 641317European Research Council 695511Medical Research Council MR/N020413/1Medical Research Council MR/S009213/1Wellcome Trust 104633Wellcome Trust 208361
6 · The paper itself

Abstract

Lipopolysaccharide (LPS) transport to the outer membrane (OM) is a crucial step in the biogenesis of microbial surface defenses. Although many features of the translocation mechanism have been elucidated, molecular details of LPS insertion via the LPS transport (Lpt) OM protein LptDE remain elusive. Here, we integrate native MS with hydrogen-deuterium exchange MS and molecular dynamics simulations to investigate the influence of substrate and peptide binding on the conformational dynamics of LptDE. Our data reveal that LPS induces opening of the LptD β-taco domain, coupled with conformational changes on β-strands adjacent to the putative lateral exit gate. Conversely, an antimicrobial peptide, thanatin, stabilizes the β-taco, thereby preventing LPS transport. Our results illustrate that LPS insertion into the OM relies on concerted opening movements of both the β-barrel and β-taco domains of LptD, and suggest a means for developing antimicrobial therapeutics targeting this essential process in Gram-negative ESKAPE pathogens.

Indexed as

Anti-Bacterial AgentsAntimicrobial Cationic PeptidesBacterial Outer Membrane ProteinsCarbohydrate ConformationDrug Resistance, BacterialGram-Negative BacteriaKlebsiella pneumoniaeLipopolysaccharidesMass SpectrometryModels, MolecularMolecular Dynamics SimulationTranslocation, GeneticAnti-Bacterial AgentsAntimicrobial Cationic PeptidesBacterial Outer Membrane ProteinsLipopolysaccharidesthanatin

Identifiers

PMID33199913
PMCPMC7116625
OpenAlexW3104453564

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.