Evidence map›Paper›PMID 33199753›Full record

ArticleScientific reports2020

Landraces of temperate japonica rice have superior alleles for improving culm strength associated with lodging resistance.

Koki Chigira, Natsuko Kojima, Masanori Yamasaki, Kenji Yano, Shunsuke Adachi, Tomohiro Nomura, Mingjin Jiang, Keisuke Katsura, Taiichiro Ookawa

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. A Novel Gene,International journal of molecular sciences · 2024
    Article
  4. Article
  5. Strong culm: a crucial trait for developing next-generation climate-resilient rice lines.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Koki ChigiraGraduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan.
Natsuko KojimaGraduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan.
Masanori YamasakiFood Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University, 1348 Uzurano-cho, Kasai, Kobe, 675-2103, Japan.
Kenji YanoStatistical Genetics Team, RIKEN Center for Advanced Intelligence Project, Nihonbashi, Tokyo, 103-0027, Japan.
Shunsuke AdachiCollege of Agriculture, Ibaraki University, 3-21-1 Chuo, Ami Town, Ibaraki, 300-0393, Japan.
Tomohiro NomuraGraduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan.
Mingjin JiangRice Research Institute of Guizhou Academy of Agricultural Science, Guiyang, 550006, Guizhou, China.
Keisuke KatsuraGraduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan.
Taiichiro OokawaGraduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan. ookawa@cc.tuat.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lodging can reduce grain yield and quality in cereal crops including rice (Oryza sativa L.). To achieve both high biomass production and lodging resistance, the breeding of new cultivars with strong culms is a promising strategy. However, little is known about the diversity of culm strength in temperate japonica rice and underlying genetic factors. Here, we report a wide variation of culm strength among 135 temperate japonica cultivars, and some landraces having the strongest culms among these cultivars. The genome-wide association study (GWAS) identified 55 quantitative trait loci for culm strength and morphological traits, and revealed several candidate genes. The superior allele of candidate gene for culm thickness, OsRLCK191, was found in many landraces but had not inherited to the modern improved cultivars. Our results suggest that landraces of temperate japonica rice have unutilized superior alleles for contributing future improvements of culm strength and lodging resistance.

Indexed as

Quantitative Trait LociCrops, AgriculturalGenome, PlantGenome-Wide Association StudyHybridization, GeneticOryzaPhenotypePlant BreedingStress, PhysiologicalWhole Genome Sequencing

Identifiers

PMID33199753
PMCPMC7670413

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.