Evidence map›Paper›PMID 33199648›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Structural basis for polarized elongation of actin filaments.

Vilmos Zsolnay, Harshwardhan H Katkar, Steven Z Chou, Thomas D Pollard, Gregory A Voth

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 46 citations in OpenAlex.

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  14. Mechanism of phosphate release from actin filaments.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  17. Mechanism of Phosphate Release from Actin Filaments.bioRxiv : the preprint server for biology · 2024
    Article
  18. Article
  19. Article
  20. Journal of chemical theory and computation · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Vilmos ZsolnayGraduate Program in Biophysical Sciences, University of Chicago, Chicago, IL 60637.
Harshwardhan H KatkarDepartment of Chemistry, University of Chicago, Chicago, IL 60637.ORCID 0000-0001-5111-8066
Steven Z ChouDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520-8103.ORCID 0000-0002-5307-376X
Thomas D PollardDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520-8103.ORCID 0000-0002-1785-2969
Gregory A VothDepartment of Chemistry, University of Chicago, Chicago, IL 60637; gavoth@uchicago.edu.ORCID 0000-0002-3267-6748
University of Chicago · USYale University · US

Funding

MOLECULAR MECHANISMS OF CELLULAR MOTILITYR01GM026338 · NIGMS · YALE UNIVERSITY · PI POLLARD, THOMAS D. · 1985 to 2020
$9.8M
Graduate Program in Biophysical Sciences at the University of Chicago - Renewal 0T32EB009412 · NIBIB · UNIVERSITY OF CHICAGO · PI ENGEL, GREGORY S, SOSNICK, TOBIN R · 2009 to 2023
$4.9M
NIBIB NIH HHS T32 EB009412NIGMS NIH HHS R01 GM026338
6 · The paper itself

Abstract

Actin filaments elongate and shorten much faster at their barbed end than their pointed end, but the molecular basis of this difference has not been understood. We use all-atom molecular dynamics simulations to investigate the properties of subunits at both ends of the filament. The terminal subunits tend toward conformations that resemble actin monomers in solution, while contacts with neighboring subunits progressively flatten the conformation of internal subunits. At the barbed end the terminal subunit is loosely tethered by its DNase-1 loop to the third subunit, because its monomer-like conformation precludes stabilizing contacts with the penultimate subunit. The motions of the terminal subunit make the partially flattened penultimate subunit accessible for binding monomers. At the pointed end, unique contacts between the penultimate and terminal subunits are consistent with existing cryogenic electron microscopic (cryo-EM) maps, limit binding to incoming monomers, and flatten the terminal subunit, which likely promotes ATP hydrolysis and rapid phosphate release. These structures explain the distinct polymerization kinetics of the two ends.

Indexed as

Models, MolecularProtein ConformationActin CytoskeletonActinsAdenosine DiphosphateAdenosine TriphosphateBinding SitesMolecular Dynamics SimulationProtein BindingProtein MultimerizationProtein SubunitsActinsAdenosine DiphosphateAdenosine TriphosphateProtein Subunitsactin filamentmolecular dynamicspolymerization

Identifiers

PMID33199648
PMCPMC7720195
OpenAlexW3106238133

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.