Evidence map›Paper›PMID 33199607›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Structure-function analysis of microRNA 3'-end trimming by Nibbler.

Wei Xie, Ivica Sowemimo, Rippei Hayashi, Juncheng Wang, Thomas R Burkard, Julius Brennecke, Stefan L Ameres, Dinshaw J Patel

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Structure, function and evolution of the bacterial DinG-like proteins.Computational and structural biotechnology journal · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Wei XieStructural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.ORCID 0000-0002-4550-6211
Ivica SowemimoInstitute of Molecular Biotechnology, Vienna BioCenter, 1030 Vienna, Austria.
Rippei HayashiDepartment of Genome Sciences, The John Curtin School of Medical Research, Australian National University, Canberra 2601, Australia.ORCID 0000-0002-5848-9019
Juncheng WangStructural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.
Thomas R BurkardInstitute of Molecular Biotechnology, Vienna BioCenter, 1030 Vienna, Austria.
Julius BrenneckeInstitute of Molecular Biotechnology, Vienna BioCenter, 1030 Vienna, Austria; julius.brennecke@imba.oeaw.ac.at stefan.ameres@imba.oeaw.ac.at pateld@mskcc.org.
Stefan L AmeresInstitute of Molecular Biotechnology, Vienna BioCenter, 1030 Vienna, Austria; julius.brennecke@imba.oeaw.ac.at stefan.ameres@imba.oeaw.ac.at pateld@mskcc.org.
Dinshaw J PatelStructural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065; julius.brennecke@imba.oeaw.ac.at stefan.ameres@imba.oeaw.ac.at pateld@mskcc.org.ORCID 0000-0002-9779-7778
Institute of Molecular Biotechnology · ATMemorial Sloan Kettering Cancer Center · USAustralian National University · AU

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI MALCOLM S. CAPEL · 2018 to 2026
$34.2M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016086NCRR NIH HHS S10 RR029205NIGMS NIH HHS P30 GM124165
6 · The paper itself

Abstract

Nibbler (Nbr) is a 3'-to-5' exoribonuclease whose catalytic 3'-end trimming activity impacts microRNA (miRNA) and PIWI-interacting RNA (piRNA) biogenesis. Here, we report on structural and functional studies to decipher the contributions of Nbr's N-terminal domain (NTD) and exonucleolytic domain (EXO) in miRNA 3'-end trimming. We have solved the crystal structures of the NTD core and EXO domains of Nbr, both in the apo-state. The NTD-core domain of

Indexed as

3' Flanking RegionRNA Processing, Post-TranscriptionalStructure-Activity RelationshipAnimalsArgonaute ProteinsDrosophila melanogasterDrosophila ProteinsExoribonucleasesMicroRNAsModels, BiologicalModels, MolecularMolecular ConformationMutationProtein BindingProtein Interaction Domains and MotifsRNA-Binding ProteinsArgonaute ProteinsDrosophila ProteinsExoribonucleasesMicroRNAsNbr protein, DrosophilaRNA-Binding ProteinsexoribonucleaseHEAT repeatsmicroRNA trimmingNibbler

Identifiers

PMID33199607
PMCPMC7720153
OpenAlexW3098591415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.