Evidence map›Paper›PMID 33197077›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2021

In Situ Labeling and Distance Measurements of Membrane Proteins in E. coli Using Finland and OX063 Trityl Labels.

Sophie Ketter, Aathira Gopinath, Olga Rogozhnikova, Dmitrii Trukhin, Victor M Tormyshev, Elena G Bagryanskaya, Benesh Joseph

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Endogenous Cu(II) Labeling for Distance Measurements on Proteins by EPR.Chemistry (Weinheim an der Bergstrasse, Germany) · 2024
    Article
  2. Article
  3. Extending the Range of Distances Accessible byJournal of the American Chemical Society · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. GdJournal of the American Chemical Society · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Chemical communications (Cambridge, England) · 2021
    Article
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sophie KetterInstitute of Biophysics, Department of Physics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438, Frankfurt/Main, Germany.
Aathira GopinathInstitute of Biophysics, Department of Physics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438, Frankfurt/Main, Germany.
Olga RogozhnikovaN. N. Vorozhtsov Novosibirsk Institute of Organic Chemistry, SB RAS, Pr. Lavrentieva 9, Novosibirsk, 630090, Russia.
Dmitrii TrukhinN. N. Vorozhtsov Novosibirsk Institute of Organic Chemistry, SB RAS, Pr. Lavrentieva 9, Novosibirsk, 630090, Russia.
Victor M TormyshevN. N. Vorozhtsov Novosibirsk Institute of Organic Chemistry, SB RAS, Pr. Lavrentieva 9, Novosibirsk, 630090, Russia.ORCID http://orcid.org/0000-0003-4975-9993
Elena G BagryanskayaN. N. Vorozhtsov Novosibirsk Institute of Organic Chemistry, SB RAS, Pr. Lavrentieva 9, Novosibirsk, 630090, Russia.ORCID http://orcid.org/0000-0003-0057-383X
Benesh JosephInstitute of Biophysics, Department of Physics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438, Frankfurt/Main, Germany.ORCID http://orcid.org/0000-0003-4968-889X

Funding

Deutsche Forschungsgemeinschaft JO 1428/1-1Deutsche Forschungsgemeinschaft SFB807Johanna Quandt Young Academy at Goethe 2018/BJ01Ministry of Science and High Education of the Russian Federation 14.W03.31.0034
6 · The paper itself

Abstract

In situ investigation of membrane proteins is a challenging task. Previously we demonstrated that nitroxide labels combined with pulsed ESR spectroscopy is a promising tool for this purpose. However, the nitroxide labels suffer from poor stability, high background labeling, and low sensitivity. Here we show that Finland (FTAM) and OX063 based labels enable labeling of the cobalamin transporter BtuB and BamA, the central component of the β-barrel assembly machinery (BAM) complex, in E coli. Compared to the methanethiosulfonate spin label (MTSL), trityl labels eliminated the background signals and enabled specific in situ labeling of the proteins with high efficiency. The OX063 labels show a long phase memory time (T

Indexed as

Electron Spin Resonance SpectroscopyEscherichia coliEscherichia coli ProteinsFinlandMembrane ProteinsSpin LabelsSulfhydryl CompoundsEscherichia coli ProteinsMembrane ProteinsSpin LabelsSulfhydryl Compoundstris(8-carboxyl-2,2,6,6-benzo(1,2-d-4,5-d)-bis(1,3)dithiole-4-yl)methyl sodium saltDEER or PELDORFTAM and OX063membrane proteinspin labelingβ-barrel assembly machinery (BAM) complex

Identifiers

PMID33197077
PMCPMC7898545

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.