Evidence map›Paper›PMID 33196636›Full record

ArticlePLoS computational biology2020

Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus.

Jingwei Ma, Myan Do, Mark A Le Gros, Charles S Peskin, Carolyn A Larabell, Yoichiro Mori, Samuel A Isaacson

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 34 citations in OpenAlex.

  1. Kinetic mechanisms for the sequence dependence of transcriptional errors.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Jingwei MaDepartment of Mathematics and Statistics, Boston University, Boston, Massachusetts, United States of America.ORCID 0000-0002-6232-4938
Myan DoDepartment of Cellular and Molecular Medicine, University of California, San Diego Medical School, San Diego, California, United States of America.ORCID 0000-0001-5892-6859
Mark A Le GrosDepartment of Anatomy, University of California, San Francisco, San Francisco, California, United States of America.
Charles S PeskinCourant Institute of Mathematical Sciences, New York University, New York, New York, United States of America.ORCID 0000-0003-3749-9864
Carolyn A LarabellDepartment of Anatomy, University of California, San Francisco, San Francisco, California, United States of America.ORCID 0000-0002-6262-4789
Yoichiro MoriDepartment of Mathematics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-4851-5148
Samuel A IsaacsonDepartment of Mathematics and Statistics, Boston University, Boston, Massachusetts, United States of America.ORCID 0000-0002-7543-8619
Boston University · USLawrence Berkeley National Laboratory · USCourant Institute of Mathematical Sciences · USUniversity of California San Diego Medical Center · USUniversity of Pennsylvania · US

Funding

TrainingP41GM103445 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LARABELL, CAROLYN A · 2012 to 2019
$8.2M
User Training and OutreachP30GM138441 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LARABELL, CAROLYN A · 2020 to 2023
$3.7M
Deciphering nuclear bodies and compartments that govern singular olfactory receptor expression.U01DA040582 · NIDA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BROWN, LEWIS M., LOMVARDAS, STAVROS · 2015 to 2019
$3.2M
NIDA NIH HHS U01 DA040582NIGMS NIH HHS P30 GM138441NIGMS NIH HHS P41 GM103445
6 · The paper itself

Abstract

For a chemical signal to propagate across a cell, it must navigate a tortuous environment involving a variety of organelle barriers. In this work we study mathematical models for a basic chemical signal, the arrival times at the nuclear membrane of proteins that are activated at the cell membrane and diffuse throughout the cytosol. Organelle surfaces within human B cells are reconstructed from soft X-ray tomographic images, and modeled as reflecting barriers to the molecules' diffusion. We show that signal inactivation sharpens signals, reducing variability in the arrival time at the nuclear membrane. Inactivation can also compensate for an observed slowdown in signal propagation induced by the presence of organelle barriers, leading to arrival times at the nuclear membrane that are comparable to models in which the cytosol is treated as an open, empty region. In the limit of strong signal inactivation this is achieved by filtering out molecules that traverse non-geodesic paths.

Indexed as

Models, BiologicalActive Transport, Cell NucleusB-LymphocytesCell MembraneCell NucleusComputational BiologyComputer SimulationHumansImaging, Three-DimensionalKineticsNuclear EnvelopeSignal TransductionTomography, X-Ray

Identifiers

PMID33196636
PMCPMC7704053
OpenAlexW3106123206

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.