Evidence map›Paper›PMID 33196145›Full record

ArticleThe EMBO journal2020

Cryo-EM structure of native human uromodulin, a zona pellucida module polymer.

Alena Stsiapanava, Chenrui Xu, Martina Brunati, Sara Zamora-Caballero, Céline Schaeffer, Marcel Bokhove, Ling Han, Hans Hebert, Marta Carroni, Shigeki Yasumasu and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Uromodulin and the study of urinary extracellular vesicles.Journal of extracellular biology · 2024
    Review
  8. Female fertility and the mammalian egg'sHistology and histopathology · 2024
    Review
  9. Article
  10. Article
  11. Uromodulin biology.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2024
    Review
  12. Article
  13. Article
  14. The role of uromodulin in cardiovascular disease: a review.Frontiers in cardiovascular medicine · 2024
    Review
  15. Biomolecules · 2023
    Article
  16. Review
  17. Article
  18. Article
  19. Role of Uromodulin in Salt-Sensitive Hypertension.Hypertension (Dallas, Tex. : 1979) · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Alena StsiapanavaDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.ORCID 0000-0001-6560-011X
Chenrui XuSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0002-5605-728X
Martina BrunatiMolecular Genetics of Renal Disorders, Division of Genetics and Cell Biology, IRCCS San Raffaele Scientific Institute, Milan, Italy.ORCID 0000-0002-1010-0836
Sara Zamora-CaballeroDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.ORCID 0000-0003-4717-8845
Céline SchaefferMolecular Genetics of Renal Disorders, Division of Genetics and Cell Biology, IRCCS San Raffaele Scientific Institute, Milan, Italy.ORCID 0000-0001-5883-3951
Marcel BokhoveDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.ORCID 0000-0001-7241-5967
Ling HanDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.ORCID 0000-0001-9310-4789
Hans HebertDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.ORCID 0000-0002-3220-9402
Marta CarroniDepartment of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, Stockholm, Sweden.ORCID 0000-0002-7697-6427
Shigeki YasumasuDepartment of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, Tokyo, Japan.ORCID 0000-0003-4295-477X
Luca RampoldiMolecular Genetics of Renal Disorders, Division of Genetics and Cell Biology, IRCCS San Raffaele Scientific Institute, Milan, Italy.ORCID 0000-0002-0544-7042
Bin WuSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0002-0883-8006
Luca JovineDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.ORCID 0000-0002-2679-6946
Karolinska Institutet · SENanyang Technological University · SGVita-Salute San Raffaele University · ITSophia University · JPStockholm University · SE

Funding

Karolinska Institutet (KI) 2016fobi50035Karolinska Institutet (KI) 2018-01646Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) 2018.0042Ministero della Salute (Ministry of Health, Italy) RF-2010-2319394Ministero della Salute (Ministry of Health, Italy) RF-2016-02362623MOH | National Medical Research Council (NMRC) MOH-000382-00Vetenskapsrådet (VR) 2016-03999
6 · The paper itself

Abstract

Assembly of extracellular filaments and matrices mediating fundamental biological processes such as morphogenesis, hearing, fertilization, and antibacterial defense is driven by a ubiquitous polymerization module known as zona pellucida (ZP) "domain". Despite the conservation of this element from hydra to humans, no detailed information is available on the filamentous conformation of any ZP module protein. Here, we report a cryo-electron microscopy study of uromodulin (UMOD)/Tamm-Horsfall protein, the most abundant protein in human urine and an archetypal ZP module-containing molecule, in its mature homopolymeric state. UMOD forms a one-start helix with an unprecedented 180-degree twist between subunits enfolded by interdomain linkers that have completely reorganized as a result of propeptide dissociation. Lateral interaction between filaments in the urine generates sheets exposing a checkerboard of binding sites to capture uropathogenic bacteria, and UMOD-based models of heteromeric vertebrate egg coat filaments identify a common sperm-binding region at the interface between subunits.

Indexed as

Amino Acid SequenceAnimalsCryoelectron MicroscopyFemaleHumansPolymerizationPolymersProtein ConformationProtein DomainsProtein Interaction Domains and MotifsUromodulinZona PellucidaPolymersUromodulincryo-electron microscopypolymerizationuromodulinzona pellucidaZP domain

Identifiers

PMID33196145
PMCPMC7737619
OpenAlexW3105698985

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.