Evidence map›Paper›PMID 33193744›Full record

ArticleFrontiers in genetics2020

QIMCMDA: MiRNA-Disease Association Prediction by q-Kernel Information and Matrix Completion.

Lin Wang, Yaguang Chen, Naiqian Zhang, Wei Chen, Yusen Zhang, Rui Gao

Abstract read
In one paragraph

Article in Frontiers in genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Lin WangSchool of Mathematics and Statistics, Shandong University, Jinan, China.
Yaguang ChenSchool of Mathematics and Statistics, Shandong University, Jinan, China.
Naiqian ZhangSchool of Mathematics and Statistics, Shandong University, Jinan, China.
Wei ChenSchool of Mathematics and Statistics, Shandong University, Jinan, China.
Yusen ZhangSchool of Mathematics and Statistics, Shandong University, Jinan, China.
Rui GaoSchool of Control Science and Engineering, Shandong University, Jinan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Studies have shown that microRNAs (miRNAs) are closely associated with many human diseases, but we have not yet fully understand the role and potential molecular mechanisms of miRNAs in the process of disease development. However, ordinary biological experiments often require higher costs, and computational methods can be used to quickly and effectively predict the potential miRNA-disease association effect at a lower cost, and can be used as a useful reference for experimental methods. For miRNA-disease association prediction, we have proposed a new method called Matrix completion algorithm based on q-kernel information (QIMCMDA). We use fivefold cross-validation and leave-one-out cross-validation to prove the effectiveness of QIMCMDA. LOOCV shows that AUC can reach 0.9235, and its performance is significantly better than other commonly used technologies. In addition, we applied QIMCMDA to case studies of three human diseases, and the results show that our method performs well in inferring potential interaction between miRNAs and diseases. It is expected that QIMCMDA will become an excellent supplement in the field of biomedical research in the future.

Indexed as

association predictionheterogeneous omics datamatrix factorizationmicroRNA-disease interactionq-kernel neighborhood similarity

Identifiers

PMID33193744
PMCPMC7643770

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.