Evidence map›Paper›PMID 33188275›Full record

ArticleScientific reports2020

Identification and dereplication of endophytic Colletotrichum strains by MALDI TOF mass spectrometry and molecular networking.

Morgane Barthélemy, Vincent Guérineau, Grégory Genta-Jouve, Mélanie Roy, Jérôme Chave, Régis Guillot, Léonie Pellissier, Jean-Luc Wolfender, Didier Stien, Véronique Eparvier and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Morgane BarthélemyUniversité Paris-Saclay, CNRS, Institut de Chimie Des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France.
Vincent GuérineauUniversité Paris-Saclay, CNRS, Institut de Chimie Des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France.
Grégory Genta-JouveUMR 8038 CiTCoM, Faculté de Pharmacie de Paris, Université Paris Descartes, Avenue de l'observatoire, 75006, Paris, France.
Mélanie RoyLaboratoire Evolution Et Diversité Biologique, UPS- CNRS - IRD - UMR 5174, Université Paul Sabatier (Toulouse 3), 118 route de Narbonne, 31062, Toulouse, France.
Jérôme ChaveLaboratoire Evolution Et Diversité Biologique, UPS- CNRS - IRD - UMR 5174, Université Paul Sabatier (Toulouse 3), 118 route de Narbonne, 31062, Toulouse, France.
Régis GuillotICMMO, Université Paris-Saclay - UMR CNRS 8182, Rue du Doyen Georges Poitou, 91405, Orsay, France.
Léonie PellissierSchool of Pharmaceutical Sciences, Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Rue Michel Servet 1, CH-1211, Geneva 4, Switzerland.
Jean-Luc WolfenderSchool of Pharmaceutical Sciences, Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Rue Michel Servet 1, CH-1211, Geneva 4, Switzerland.
Didier StienSorbonne Université, CNRS, Laboratoire de Biodiversité et Biotechnologies Microbiennes, USR3579, Observatoire Océanologique, Banyuls-sur-Mer, France.
Véronique EparvierUniversité Paris-Saclay, CNRS, Institut de Chimie Des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France. veronique.eparvier@cnrs.fr.
David TouboulUniversité Paris-Saclay, CNRS, Institut de Chimie Des Substances Naturelles, UPR 2301, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France. david.touboul@cnrs.fr.
Université Paris-Saclay · FRInstitut de Chimie des Substances Naturelles · FRUniversité Toulouse III - Paul Sabatier · FRUniversity of Geneva · CHMuséum national d'Histoire naturelle · FRSorbonne Université · FR

Funding

Swiss National Science Foundation 310030E-164289
6 · The paper itself

Abstract

The chemical diversity of biologically active fungal strains from 42 Colletotrichum, isolated from leaves of the tropical palm species Astrocaryum sciophilum collected in pristine forests of French Guiana, was investigated. The collection was first classified based on protein fingerprints acquired by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) correlated with cytotoxicity. Liquid chromatography coupled to high-resolution tandem mass spectrometry (LC-HRMS/MS) data from ethyl acetate extracts were acquired and processed to generate a massive molecular network (MN) using the MetGem software. From five Colletotrichum strains producing cytotoxic specialized metabolites, we predicted the occurrence of peptide and cytochalasin analogues in four of them by MN, including a similar ion clusters in the MN algorithm provided by MetGem software. Chemoinformatics predictions were fully confirmed after isolation of three pentacyclopeptides (cyclo(Phe-Leu-Leu-Leu-Val), cyclo(Phe-Leu-Leu-Leu-Leu) and cyclo(Phe-Leu-Leu-Leu-Ile)) and two cytochalasins (cytochalasin C and cytochalasin D) exhibiting cytotoxicity at the micromolar concentration. Finally, the chemical study of the last active cytotoxic strain BSNB-0583 led to the isolation of four colletamides bearing an identical decadienamide chain.

Indexed as

AlgorithmsChromatography, High Pressure LiquidChromatography, LiquidColletotrichumFrench GuianaSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTandem Mass Spectrometry

Identifiers

PMID33188275
PMCPMC7666161
OpenAlexW3105514546

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.