Evidence map›Paper›PMID 33188200›Full record

ArticleNature communications2020

A translational program that suppresses metabolism to shield the genome.

Nathan C Balukoff, J J David Ho, Phaedra R Theodoridis, Miling Wang, Michael Bokros, Lis M Llanio, Jonathan R Krieger, Jonathan H Schatz, Stephen Lee

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. eIF5A coordinates the transcription and translation of its target genes.Cellular and molecular life sciences : CMLS · 2026
    Article
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  6. Review
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  9. Global analyses of mRNA expression in human sensory neurons reveal eIF5A as a conserved target for inflammatory pain.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Nathan C BalukoffDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.ORCID 0000-0002-0090-9842
J J David HoDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.
Phaedra R TheodoridisDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.
Miling WangDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.
Michael BokrosDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.
Lis M LlanioDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.
Jonathan R KriegerThe SickKids Proteomics, Analytics, Robotics & Chemical Biology Centre (SPARC Biocentre), The Hospital for Sick Children, Toronto, ON, M5G 1×8, Canada.
Jonathan H SchatzSylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.ORCID 0000-0003-1842-228X
Stephen LeeDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA. stephenlee@med.miami.edu.ORCID 0000-0001-7517-8186
University of Miami · USHospital for Sick Children · CA

Funding

Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI George S. Grills · 2019 to 2026
$24.1M
Cancer Immunotherapy Trials Network Central Operations and Statistical CenterUM1CA154967 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DAVIDSON, NANCY ELLEN · 2017 to 2022
$20.7M
The Nucleolar Detention Center: a Hub of Long Noncoding RNAs that Imprison Proteins During StressR01GM115342 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LEE, STEPHEN · 2015 to 2022
$2.6M
Induction of Tumor Cell Dormancy by Ribosomal Intergenic Spacer Noncoding RNAR01CA200676 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LEE, STEPHEN · 2016 to 2020
$1.7M
A New Treatment Paradigm for ALK-Driven Cancers Exploiting Oncogene OverdoseR01CA190696 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SCHATZ, JONATHAN H · 2014 to 2018
$1.5M
Cancer Epigenetics Training ProgramT32CA217835 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FIGUEROA, MARIA EUGENIA, MOREY, LLUIS · 2018 to 2022
$1.3M
Adaptation to Extracellular Acidosis by pH-Sensing eIF5AF30CA243268 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BALUKOFF, NATHAN CHARLES · 2019 to 2021
$149k
NCI NIH HHS F30 CA243268NCI NIH HHS P30 CA240139NCI NIH HHS R01 CA190696NCI NIH HHS R01 CA200676NCI NIH HHS T32 CA217835NCI NIH HHS UM1 CA154967NIGMS NIH HHS R01 GM115342
6 · The paper itself

Abstract

Translatome reprogramming is a primary determinant of protein levels during stimuli adaptation. This raises the question: what are the translatome remodelers that reprogram protein output to activate biochemical adaptations. Here, we identify a translational pathway that represses metabolism to safeguard genome integrity. A system-wide MATRIX survey identified the ancient eIF5A as a pH-regulated translation factor that responds to fermentation-induced acidosis. TMT-pulse-SILAC analysis identified several pH-dependent proteins, including the mTORC1 suppressor Tsc2 and the longevity regulator Sirt1. Sirt1 operates as a pH-sensor that deacetylates nuclear eIF5A during anaerobiosis, enabling the cytoplasmic export of eIF5A/Tsc2 mRNA complexes for translational engagement. Tsc2 induction inhibits mTORC1 to suppress cellular metabolism and prevent acidosis-induced DNA damage. Depletion of eIF5A or Tsc2 leads to metabolic re-initiation and proliferation, but at the expense of incurring substantial DNA damage. We suggest that eIF5A operates as a translatome remodeler that suppresses metabolism to shield the genome.

Indexed as

DNA DamageProtein BiosynthesisAcidosisActive Transport, Cell NucleusAdenosine TriphosphateCell HypoxiaCell Line, TumorCell NucleusCell ProliferationEukaryotic Translation Initiation Factor 5AHumansMechanistic Target of Rapamycin Complex 1Peptide Initiation FactorsProteomicsRNA-Binding ProteinsRNA, MessengerAdenosine TriphosphateEukaryotic Translation Initiation Factor 5AMechanistic Target of Rapamycin Complex 1Peptide Initiation FactorsRNA-Binding ProteinsRNA, MessengerSIRT1 protein, humanSirtuin 1TSC2 protein, humanTuberous Sclerosis Complex 2 Protein

Identifiers

PMID33188200
PMCPMC7666154
OpenAlexW3105502005

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.