Evidence map›Paper›PMID 33188013›Full record

ArticleScience advances2020

Dedifferentiation and neuronal repression define familial Alzheimer's disease.

Andrew B Caldwell, Qing Liu, Gary P Schroth, Douglas R Galasko, Shauna H Yuan, Steven L Wagner, Shankar Subramaniam

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 6 citations in OpenAlex.

  1. MECP2Science China. Life sciences · 2026
    Article
  2. Resistance of E2F4DN to p38Scientific reports · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Ovarian germline stem cell dedifferentiation is cytoneme dependent.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Andrew B CaldwellDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-2850-7677
Qing LiuDepartment of Neurosciences, University of California, San Diego, La Jolla, CA, USA.
Gary P SchrothIllumina Inc., San Diego, CA, USA.ORCID 0000-0002-3055-056X
Douglas R GalaskoDepartment of Neurosciences, University of California, San Diego, La Jolla, CA, USA.
Shauna H YuanDepartment of Neurosciences, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0003-4058-4146
Steven L WagnerDepartment of Neurosciences, University of California, San Diego, La Jolla, CA, USA.
Shankar SubramaniamDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, USA. shankar@ucsd.edu.ORCID 0000-0002-8059-4659
University of California San Diego · USIllumina (United States) · USUniversity of Minnesota · US

Funding

VIRUS-INDUCED BRAIN PATHOLOGYP50AG005131 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COREY-BLOOM, JODY · 1985 to 2018
$55.4M
Shear Regulation of MicroRNA Transportomes and Targetomes in Vascular HomeostasisR01HL106579 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2011 to 2022
$8.3M
The Metabolomics Data Center and Workbench (MDCW)U01DK097430 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2012 to 2017
$7.4M
An Integrative Omics Approach to Identify Biomarkers Related to Preeclampsia and Breast Cancer RisksR01HD084633 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2020
$3.0M
Optimization of Soluble Gamma-secretase Modulators for the Treatment of AlzheimerU01NS074501 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WAGNER, STEVEN LEE · 2011 to 2015
$1.4M
Theoretical Foundations and Software Infrastructure for Biological Network DatabasesU01CA198941 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI KOYUTURK, MEHMET · 2015 to 2017
$1.4M
Reconstruction and Modeling of Dynamical Molecular NetworksR01LM012595 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2018 to 2021
$1.3M
A Dominantly Inherited AD network In Vitro Trial with a Gamma-Secretase ModulatorI01RX002259 · VA · VA SAN DIEGO HEALTHCARE SYSTEM · PI WAGNER, STEVEN LEE · 2017 to 2020
–
NCI NIH HHS U01 CA198941NHLBI NIH HHS R01 HL106579NIA NIH HHS P50 AG005131NICHD NIH HHS R01 HD084633NIDDK NIH HHS U01 DK097430NINDS NIH HHS U01 NS074501NLM NIH HHS R01 LM012595RRD VA I01 RX002259
6 · The paper itself

Abstract

Identifying the systems-level mechanisms that lead to Alzheimer's disease, an unmet need, is an essential step toward the development of therapeutics. In this work, we report that the key disease-causative mechanisms, including dedifferentiation and repression of neuronal identity, are triggered by changes in chromatin topology. Here, we generated human induced pluripotent stem cell (hiPSC)-derived neurons from donor patients with early-onset familial Alzheimer's disease (EOFAD) and used a multiomics approach to mechanistically characterize the modulation of disease-associated gene regulatory programs. We demonstrate that EOFAD neurons dedifferentiate to a precursor-like state with signatures of ectoderm and nonectoderm lineages. RNA-seq, ATAC-seq, and ChIP-seq analysis reveals that transcriptional alterations in the cellular state are orchestrated by changes in histone methylation and chromatin topology. Furthermore, we demonstrate that these mechanisms are observed in EOFAD-patient brains, validating our hiPSC-derived neuron models. The mechanistic endotypes of Alzheimer's disease uncovered here offer key insights for therapeutic interventions.

Indexed as

Alzheimer DiseaseInduced Pluripotent Stem CellsChromatinHumansMutationNeuronsChromatin

Identifiers

PMID33188013
PMCPMC7673760
OpenAlexW2912665828

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.