Evidence map›Paper›PMID 33187194›Full record

ArticlePathogens (Basel, Switzerland)2020

Impact of Porcine Arterivirus, Influenza B, and Their Coinfection on Antiviral Response in the Porcine Lung.

Damarius S Fleming, Laura C Miller, Yun Tian, Yonghai Li, Wenjun Ma, Yongming Sang

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Damarius S FlemingOak Ridge Institute for Science and Education Oakridge, Oak Ridge Associated Universities, Oak Ridge, TN 37830, USA.
Laura C MillerVirus and Prion Research Unit, National Animal Disease Center, USDA, Agricultural Research Service, Ames, IA 50161, USA.
Yun TianDepartment of Agricultural and Environmental Sciences, Tennessee State University, Nashville, TN 37209, USA.
Yonghai LiDepartment of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, KS 66506, USA.
Wenjun MaDepartment of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0003-0395-9404
Yongming SangDepartment of Agricultural and Environmental Sciences, Tennessee State University, Nashville, TN 37209, USA.ORCID 0000-0002-2980-2854
Kansas State University · USTennessee State University · USAgricultural Research Service · USOak Ridge Associated Universities · US

Funding

National Institute of Food and Agriculture NIFA 2018-67016-28313National Institute of Food and Agriculture USDA NIFA Evans-Allen-1013186National Science Foundation NSF-IOS-1831988Oak Ridge Institute for Science and Education DE-AC05-06OR23100
6 · The paper itself

Abstract

Interferon (IFN) cytokines induce autonomous antiviral state in cells of the infected site to restrict virus spreading and critically regulate overall antiviral response. The antiviral state leads to host protection through expression of hundreds of IFN-stimulated genes that restrict viral infection through multiple mechanisms, for example, directly in viral genome degradation and indirectly through cellular metabolic inhibition. Young pigs were split into four treatment groups: control, porcine reproductive and respiratory syndrome virus (PRRSV, also known as porcine arterivirus) infected, influenza B virus (IBV) infected, and IBV/PRRSV coinfection. Lung tissue was collected at 3, 5, and 7 days post infection (dpi) for control, PRRSV and IBV/PRRSV coinfection, and at 3 and 5 dpi for IBV. Transcriptomic analysis, using usegalaxy.org tools, was performed against the S.scrofa 11.1 reference genome. Differentially expressed gene (DEG) analysis was carried out using DeSeq2 based on the model treatment + dpi + treatment:dpi + E. Downstream analysis examined the interaction of DEG at each dpi for over-enriched gene ontology (G.O.) terms and pathways. Comparisons of the infected groups vs. the controls yielded a total of (

Indexed as

differential expressionIBV-Simmune responselungPRRSV

Identifiers

PMID33187194
PMCPMC7697066
OpenAlexW3104502569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.