ReviewInternational journal of molecular sciences2020
Soil Metaproteomics for the Study of the Relationships Between Microorganisms and Plants: A Review of Extraction Protocols and Ecological Insights.
Review in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- The Plant-Microbe Alliance for Environmental Restoration: From Nature-Inspired Solutions to Engineered Ecological Recovery.Microbial biotechnology · 2026Article
- Emerging strategies for heavy metal removal in soils: plant-microbe interactions and omics perspectives.Archives of microbiology · 2026Review
- Soil Metaproteomics for Microbial Community Profiling: Methodologies and Challenges.Current microbiology · 2024Review
- [Microbial metaproteomics--From sample processing to data acquisition and analysis].Se pu = Chinese journal of chromatography · 2024Review
- Extraction of Proteins from Fermented Food.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Proteomic Analysis of In Vitro Plant Tissues (Coffea canephora): A Case of Study.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Extraction of Proteins from Soil.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Bacterial communities in co-cultured fish intestines and rice field soil irrigated with aquaculture wastewater.AMB Express · 2022Article
- The Promises, Challenges, and Opportunities of Omics for Studying the Plant Holobiont.Microorganisms · 2022Article
- Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbance.BMC microbiology · 2021Article
- Increasing the power of interpretation for soil metaproteomics data.Microbiome · 2021Article
- Plant Proteomic Research 3.0: Challenges and Perspectives.International journal of molecular sciences · 2021Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Soil is a complex matrix where biotic and abiotic components establish a still unclear network involving bacteria, fungi, archaea, protists, protozoa, and roots that are in constant communication with each other. Understanding these interactions has recently focused on metagenomics, metatranscriptomics and less on metaproteomics studies. Metaproteomic allows total extraction of intracellular and extracellular proteins from soil samples, providing a complete picture of the physiological and functional state of the "soil community". The advancement of high-performance mass spectrometry technologies was more rapid than the development of ad hoc extraction techniques for soil proteins. The protein extraction from environmental samples is biased due to interfering substances and the lower amount of proteins in comparison to cell cultures. Soil sample preparation and extraction methodology are crucial steps to obtain high-quality resolution and yields of proteins. This review focuses on the several soil protein extraction protocols to date to highlight the methodological challenges and critical issues for the application of proteomics to soil samples. This review concludes that improvements in soil protein extraction, together with the employment of ad hoc metagenome database, may enhance the identification of proteins with low abundance or from non-dominant populations and increase our capacity to predict functional changes in soil.
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