Evidence map›Paper›PMID 33184780›Full record

ArticleCell stress & chaperones2021

Genome-wide analysis of Hsp70 and Hsp100 gene families in Ziziphus jujuba.

Kishor Prabhakar Panzade, Sonam S Kale, Narendra R Chavan, Bhupal Hatzade

Open access · greenAbstract read
In one paragraph

Article in Cell stress & chaperones, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kishor Prabhakar PanzadeDivision of Molecular Biology and Biotechnology, Indian Agriculture Research Institute, New Delhi, 110012, India. kishor.panzade@gmail.com.ORCID 0000-0002-7522-8734
Sonam S KaleDepartment of Plant Biotechnology, MGM College of Agricultural Biotechnology, Aurangabad, 431007, India.ORCID 0000-0001-6331-1154
Narendra R ChavanDepartment of Plant Biotechnology, MGM College of Agricultural Biotechnology, Aurangabad, 431007, India.
Bhupal HatzadeDepartment of Plant Biotechnology, Ajeet Seeds Pvt. Ltd., Aurangabad, 431133, India.ORCID 0000-0001-6430-7907
Indian Agricultural Research Institute · INMaharashtra Hybrid Seeds (India) · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ziziphus species are naturally tolerant to a range of abiotic stresses. Therefore, it is expected that they are an enriched source of genes conferring stress tolerance. Heat shock proteins (Hsps) play a significant role in plants in imparting tolerance against abiotic stress conditions. To get an insight into potential Hsp function in Ziziphus, we performed a genome-wide analysis and expression study of Hsp70 and Hsp100 gene families in Ziziphus jujuba. We identified 21 and 6 genes of the ZjHsp70 and ZjHsp100 families, respectively. Physiochemical properties, chromosomal location, gene structure, motifs, and protein domain organization were analysed for structural and functional characterization. We identified the contribution of tandem and segmental gene duplications in expansions of ZjHsp70s and ZjHsp100s in Z. jujuba. Promoter analysis suggested that ZjHsp70s and ZjHsp100s perform diverse functions related to abiotic stress. Furthermore, expression analyses revealed that most of the Z. jujuba Hsp genes are differentially expressed in response to heat, drought, and salinity stress. Our analyses suggested ZjHsp70-3, ZjHsp70-5, ZjHsp70-6, ZjHsp70-16, ZjHsp70-17, ZjHsp70-20, ZjHsp100-1, ZjHsp100-2, and ZjHsp100-3 are potential candidates for further functional analysis and with regard to breeding new more resilient strains. The present analysis laid the foundation for understanding the molecular mechanism of Hsps70 and Hsp100 gene families regulating abiotic stress tolerance in Z. jujuba.

Indexed as

Gene Expression Regulation, PlantStress, PhysiologicalHSP70 Heat-Shock ProteinsPlant ProteinsZiziphusHSP70 Heat-Shock ProteinsPlant ProteinsExpression analysisGene familyGenome-wide analysisHeat shock protein (Hsp)qRT-PCRZ. jujuba

Identifiers

PMID33184780
PMCPMC7925773
OpenAlexW3103916829

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.