Evidence map›Paper›PMID 33184407›Full record

ArticleCommunications biology2020

Anti-apoptotic BCL-2 regulation by changes in dynamics of its long unstructured loop.

Yu-Jing Lan, Pei-Shan Yeh, Te-Yu Kao, Yuan-Chao Lo, Shih-Che Sue, Yu-Wen Chen, Dennis W Hwang, Yun-Wei Chiang

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yu-Jing LanDepartment of Chemistry, National Tsing Hua University, Hsinchu, Taiwan.
Pei-Shan YehDepartment of Chemistry, National Tsing Hua University, Hsinchu, Taiwan.
Te-Yu KaoDepartment of Chemistry, National Tsing Hua University, Hsinchu, Taiwan.ORCID 0000-0002-3286-3287
Yuan-Chao LoBiomedical Translation Research Center, Academia Sinica, Taipei, Taiwan.
Shih-Che SueInstitute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu, Taiwan.
Yu-Wen ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Dennis W HwangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan. dwhwang@ibms.sinica.edu.tw.
Yun-Wei ChiangDepartment of Chemistry, National Tsing Hua University, Hsinchu, Taiwan. ywchiang@gapp.nthu.edu.tw.ORCID 0000-0002-2101-8918
National Tsing Hua University · TWInstitute of Biomedical Sciences, Academia Sinica · TWAcademia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BCL-2, a key protein in inhibiting apoptosis, has a 65-residue-long highly flexible loop domain (FLD) located on the opposite side of its ligand-binding groove. In vivo phosphorylation of the FLD enhances the affinity of BCL-2 for pro-apoptotic ligands, and consequently anti-apoptotic activity. However, it remains unknown as to how the faraway, unstructured FLD modulates the affinity. Here we investigate the protein-ligand interactions by fluorescence techniques and monitor protein dynamics by DEER and NMR spectroscopy tools. We show that phosphomimetic mutations on the FLD lead to a reduction in structural flexibility, hence promoting ligand access to the groove. The bound pro-apoptotic ligands can be displaced by the BCL-2-selective inhibitor ABT-199 efficiently, and thus released to trigger apoptosis. We show that changes in structural flexibility on an unstructured loop can activate an allosteric protein that is otherwise structurally inactive.

Indexed as

Allosteric RegulationBridged Bicyclo Compounds, HeterocyclicHumansLigandsMolecular Dynamics SimulationPhosphorylationProtein DomainsProto-Oncogene Proteins c-bcl-2Recombinant ProteinsSulfonamidesBCL2 protein, humanBridged Bicyclo Compounds, HeterocyclicLigandsProto-Oncogene Proteins c-bcl-2Recombinant ProteinsSulfonamidesvenetoclax

Identifiers

PMID33184407
PMCPMC7665024
OpenAlexW3101502667

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.