Evidence map›Paper›PMID 33184340›Full record

ArticleScientific reports2020

Human pericentromeric tandemly repeated DNA is transcribed at the end of oocyte maturation and is associated with membraneless mitochondria-associated structures.

M A Dobrynin, N M Korchagina, A D Prjibelski, D Shafranskaya, D I Ostromyshenskii, K Shunkina, I Stepanova, A V Kotova, O I Podgornaya, N I Enukashvily

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Expression ofInternational journal of molecular sciences · 2025
    Article
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  5. Article
  6. Article
  7. Article
  8. Germ Granules in Animal Oogenesis.Journal of developmental biology · 2022
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

M A DobryninInstitute of Cytology RAS, Saint Petersburg, Russia.
N M KorchaginaAva-Peter - Scandinavia Assisted Reproductive Technology Clinic, Saint Petersburg, Russia.
A D PrjibelskiCenter for Algorithmic Biotechnology, St. Petersburg State University, Saint Petersburg, Russia.
D ShafranskayaCenter for Algorithmic Biotechnology, St. Petersburg State University, Saint Petersburg, Russia.
D I OstromyshenskiiInstitute of Cytology RAS, Saint Petersburg, Russia.
K ShunkinaAva-Peter - Scandinavia Assisted Reproductive Technology Clinic, Saint Petersburg, Russia.
I StepanovaInstitute of Cytology RAS, Saint Petersburg, Russia.
A V KotovaInstitute of Cytology RAS, Saint Petersburg, Russia.
O I PodgornayaInstitute of Cytology RAS, Saint Petersburg, Russia.
N I EnukashvilyInstitute of Cytology RAS, Saint Petersburg, Russia. n.enukashvily@incras.ru.
Institute of Cytology · RUSt Petersburg University · RUNorth-Western State Medical University named after I.I. Mechnikov · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most of the human genome is non-coding. However, some of the non-coding part is transcriptionally active. In humans, the tandemly repeated (TR) pericentromeric non-coding DNA-human satellites 2 and 3 (HS2, HS3)-are transcribed in somatic cells. These transcripts are also found in pre- and post-implantation embryos. The aim of this study was to analyze HS2/HS3 transcription and cellular localization of transcripts in human maturating oocytes. The maternal HS2/HS3 TR transcripts transcribed from both strands were accumulated in the ooplasm in GV-MI oocytes as shown by DNA-RNA FISH (fluorescence in-situ hybridization). The transcripts' content was higher in GV oocytes than in somatic cumulus cells according to real-time PCR. Using bioinformatics analysis, we demonstrated the presence of polyadenylated HS2 and HS3 RNAs in datasets of GV and MII oocyte transcriptomes. The transcripts shared a high degree of homology with HS2, HS3 transcripts previously observed in cancer cells. The HS2/HS3 transcripts were revealed by a combination of FISH and immunocytochemical staining within membraneless RNP structures that contained DEAD-box helicases DDX5 and DDX4. The RNP structures were closely associated with mitochondria, and are therefore similar to membraneless bodies described previously only in oogonia. These membraneless structures may be a site for spatial sequestration of RNAs and proteins in both maturating oocytes and cancer cells.

Indexed as

OogenesisCumulus CellsDNA, SatelliteFemaleGene Expression RegulationHumansLocus Control RegionMitochondriaOocytesRibonucleoproteinsTranscriptomeDNA, SatelliteRibonucleoproteins

Identifiers

PMID33184340
PMCPMC7665179
OpenAlexW3102935762

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.