Evidence map›Paper›PMID 33184237›Full record

ArticleScience (New York, N.Y.)2020

The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation.

Charlie Y Shi, Elena R Kingston, Benjamin Kleaveland, Daniel H Lin, Michael W Stubna, David P Bartel

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed
11.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 241 citations in OpenAlex.

  1. Article
  2. Review
  3. Are RNA Therapies a Solid Foundation or a Frontier Yet to Be Conquered?International journal of molecular sciences · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Linking miRNAs to decay.Genes & development · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. bioRxiv : the preprint server for biology · 2026
    Article
  17. Article
  18. Review
  19. The pathophysiological role of MiRNAs in heart failure.Frontiers in cardiovascular medicine · 2026
    Review
  20. Article

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Charlie Y ShiHoward Hughes Medical Institute, Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.ORCID https://orcid.org/0000-0001-5229-9196
Elena R KingstonHoward Hughes Medical Institute, Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.ORCID https://orcid.org/0000-0003-4295-4518
Benjamin KleavelandDepartment of Pathology and Lab Medicine, Weill Cornell Medicine, New York, NY 10065, USA.ORCID https://orcid.org/0000-0002-0333-3586
Daniel H LinHoward Hughes Medical Institute, Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.ORCID https://orcid.org/0000-0002-1393-3374
Michael W StubnaHoward Hughes Medical Institute, Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.ORCID https://orcid.org/0000-0003-4950-9273
David P BartelHoward Hughes Medical Institute, Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA. dbartel@wi.mit.edu.ORCID https://orcid.org/0000-0002-3872-2856
Howard Hughes Medical Institute · USCornell University · US

Funding

PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
Post-transcriptional gene regulationR35GM118135 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI DAVID P BARTEL · 2016 to 2026
$10.7M
Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Howard Hughes Medical InstituteNIGMS NIH HHS R35 GM118135NIGMS NIH HHS T32 GM007287NIGMS NIH HHS T32 GM087237
6 · The paper itself

Abstract

MicroRNAs (miRNAs) associate with Argonaute (AGO) proteins to direct widespread posttranscriptional gene repression. Although association with AGO typically protects miRNAs from nucleases, extensive pairing to some unusual target RNAs can trigger miRNA degradation. We found that this target-directed miRNA degradation (TDMD) required the ZSWIM8 Cullin-RING E3 ubiquitin ligase. This and other findings support a mechanistic model of TDMD in which target-directed proteolysis of AGO by the ubiquitin-proteasome pathway exposes the miRNA for degradation. Moreover, loss-of-function studies indicated that the ZSWIM8 Cullin-RING ligase accelerates degradation of numerous miRNAs in cells of mammals, flies, and nematodes, thereby specifying the half-lives of most short-lived miRNAs. These results elucidate the mechanism of TDMD and expand its inferred role in shaping miRNA levels in bilaterian animals.

Indexed as

RNA StabilityAnimalsArgonaute ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsDrosophilaDrosophila ProteinsElonginGene Knockdown TechniquesHumansK562 CellsMiceMicroRNAsNIH 3T3 CellsProteolysisRNA, Long NoncodingArgonaute ProteinsCaenorhabditis elegans ProteinsDrosophila ProteinsEBAX-1 protein, C elegansElonginlong noncoding RNA OIP5, humanMicroRNAsMir7 microRNA, DrosophilaMIRN7-1 microRNA, humanMIRN7 microRNA, mouseRNA, Long NoncodingUbiquitin-Protein LigasesZSWIM8 protein, humanZswim8 protein, mouse

Identifiers

PMID33184237
PMCPMC8356967
OpenAlexW3105214972

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.