Evidence map›Paper›PMID 33183239›Full record

ArticleBMC plant biology2020

Comparative transcriptome analysis reveals evolutionary divergence and shared network of cold and salt stress response in diploid D-genome cotton.

Yanchao Xu, Richard Odongo Magwanga, Dingsha Jin, Xiaoyan Cai, Yuqing Hou, Zheng Juyun, Stephen Gaya Agong, Kunbo Wang, Fang Liu, Zhongli Zhou

Abstract readComparative Study
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2024
    Article
  5. Comparative Transcriptomics of Multi-Stress Responses inInternational journal of molecular sciences · 2023
    Article
  6. Review
  7. A Comprehensive Gene Co-Expression Network Analysis Reveals a Role ofInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yanchao XuState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Richard Odongo MagwangaState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Dingsha JinState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Xiaoyan CaiState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Yuqing HouState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Zheng JuyunEconomic Crops Research Institute of Xinjiang Academy of Agricultural Science, Urumqi, Xinjiang province, China.
Stephen Gaya AgongSchool of Biological, Physical, Mathematics and Actuarial sciences (SBPMAS), Main campus, Jaramogi Oginga Odinga University of Science and Technology (JOOUST), P.O Box 210-40601, Bondo, Kenya.
Kunbo WangState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China. wangkunbo@caas.cn.
Fang LiuState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China. liufcri@caas.com.ORCID http://orcid.org/0000-0002-1900-5798
Zhongli ZhouState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China. zhouzl@cricaas.com.cn.

Funding

National Key Research and Development Plan 2016YFD0100203National Natural Science Foundation of China 31530053Talents cultivation plan of Xinjiang, the project of train youth excellent S&T talents 2017Q050
6 · The paper itself

Abstract

backgroundWild species of cotton are excellent resistance to abiotic stress. Diploid D-genome cotton showed abundant phenotypic diversity and was the putative donor species of allotetraploid cotton which produce the largest textile natural fiber.

resultsA total of 41,053 genes were expressed in all samples by mapping RNA-seq Illumina reads of G. thurberi (D

conclusionOur study provided new evidence that gene expression variations of evolution by natural selection were essential drivers of the morphological variations related to environmental adaptation during evolution. Additionally, there exist shared regulated networks under cold and salt stress, such as Ca

Indexed as

DiploidyEvolution, MolecularCold-Shock ResponseGene Expression Regulation, PlantGenetic VariationGenome, PlantGenotypeGossypiumPhylogenySalt StressTranscriptomeCo-expressionComparative transcriptomeDiploid D-genome cottonEvolutionary divergenceShared network

Identifiers

PMID33183239
PMCPMC7664088

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.