Evidence map›Paper›PMID 33183231›Full record

ArticleBMC microbiology2020

Genome-based characterization of two Colombian clinical Providencia rettgeri isolates co-harboring NDM-1, VIM-2, and other β-lactamases.

Adriana Piza-Buitrago, Verónica Rincón, John Donato, Sandra Yamile Saavedra, Carolina Duarte, Jaime Morero, Laurent Falquet, María Teresa Reguero, Emiliano Barreto-Hernández

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
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  4. Microbiology spectrum · 2024
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  5. An outbreak ofFrontiers in microbiology · 2024
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  6. Characterization of ST15-KL112Infection and drug resistance · 2024
    Article
  7. Article
  8. Detection of NDM-1 and OXA-10 Co-ProducingInfection and drug resistance · 2023
    Article
  9. Article
  10. Emergence of Carbapenem-resistant Clinical Isolates ofJuntendo Iji zasshi = Juntendo medical journal · 2022
    Review
  11. Article
  12. Occurrence of NDM-1, VIM-1, and OXA-10 Co-ProducingFrontiers in cellular and infection microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Adriana Piza-BuitragoBioinformatics Group, Biotechnology Institute, Universidad Nacional de Colombia, Bogotá, Colombia.
Verónica RincónBioinformatics Group, Biotechnology Institute, Universidad Nacional de Colombia, Bogotá, Colombia.
John DonatoBioinformatics Group, Biotechnology Institute, Universidad Nacional de Colombia, Bogotá, Colombia.
Sandra Yamile SaavedraGrupo de Microbiología, Instituto Nacional de Salud, Bogotá, Colombia.
Carolina DuarteGrupo de Microbiología, Instituto Nacional de Salud, Bogotá, Colombia.
Jaime MoreroGrupo de Microbiología, Instituto Nacional de Salud, Bogotá, Colombia.
Laurent FalquetBiochemistry/Bioinformatics Unit, Université de Fribourg and Swiss Institute of Bioinformatics, Fribourg, Switzerland.
María Teresa RegueroBioinformatics Group, Biotechnology Institute, Universidad Nacional de Colombia, Bogotá, Colombia.
Emiliano Barreto-HernándezBioinformatics Group, Biotechnology Institute, Universidad Nacional de Colombia, Bogotá, Colombia. ebarretoh@unal.edu.co.ORCID 0000-0002-5968-6794
Universidad Nacional de Colombia · COInstituto Nacional de Salud · COSIB Swiss Institute of Bioinformatics · CH

Funding

COLCIENCIAS FP44842-155-2015DIEB, Universidad Nacional de Colombia CO) 35030
6 · The paper itself

Abstract

backgroundProvidencia rettgeri is a nosocomial pathogen associated with urinary tract infections and related to Healthcare-Associated Infection (HAI). In recent years isolates producing New Delhi Metallo-β-lactamase (NDM) and other β-lactamases have been reported that reduce the efficiency of clinical antimicrobial treatments. In this study, we analyzed antibiotic resistance, the presence of resistance genes and the clonal relationship of two P. rettgeri isolates obtained from male patients admitted to the same hospital in Bogotá - Colombia, 2015.

resultsAntibiotic susceptibility profile evaluated by the Kirby-Bauer method revealed that both isolates were resistant to third-generation carbapenems and cephalosporins. Whole-genome sequencing (Illumina HiSeq) followed by SPAdes assembling, Prokka annotation in combination with an in-house Python program and resistance gene detection by ResFinder identified the same six β-lactamase genes in both isolates: bla

conclusionsWe report the coexistence of the carbapenemase genes bla

Indexed as

Anti-Bacterial AgentsBacterial Proteinsbeta-Lactamasesbeta-Lactam ResistanceColombiaDrug Resistance, Multiple, BacterialEnterobacteriaceae InfectionsGenome, BacterialHumansMaleMicrobial Sensitivity TestsProvidenciaAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesAnd blaTEM-1blaCMY-2blaCTX-M-15blaOXA-10Whole-genome sequencing

Identifiers

PMID33183231
PMCPMC7664025
OpenAlexW3101839339

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.