Evidence map›Paper›PMID 33182805›Full record

ArticleInternational journal of molecular sciences2020

A Lipidomic Signature Complements Stemness Features Acquisition in Liver Cancer Cells.

Irma Magaly Rivas Serna, Ilaria Romito, Andrea Maugeri, Oriana Lo Re, Sebastiano Giallongo, Gianluigi Mazzoccoli, Jude A Oben, Giovanni Li Volti, Tommaso Mazza, Anna Alisi and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. Epigenetic remodelling in human hepatocellular carcinoma.Journal of experimental & clinical cancer research : CR · 2022
    Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 4 countries.

Irma Magaly Rivas SernaInternational Clinical Research Center, St. Anne's University Hospital, 65691 Brno, Czech Republic.
Ilaria RomitoResearch Area for Multifactorial Diseases, Research Unit of Molecular Genetics of Complex Phenotypes, Bambino Gesù Children's Hospital, IRCCS, 00165 Rome, Italy.
Andrea MaugeriDepartment of Medical and Surgical Sciences and Advanced Technologies "GF Ingrassia", University of Catania, 95123 Catania, Italy.
Oriana Lo ReInternational Clinical Research Center, St. Anne's University Hospital, 65691 Brno, Czech Republic.
Sebastiano GiallongoInternational Clinical Research Center, St. Anne's University Hospital, 65691 Brno, Czech Republic.
Gianluigi MazzoccoliDepartment of Medical Sciences and Chronobiology Laboratory, Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, Italy.ORCID 0000-0003-3535-7635
Jude A ObenInstitute for Liver and Digestive Health, Division of Medicine, University College London (UCL), London NW32PF, UK.
Giovanni Li VoltiDepartment of Biomedical and Biotechnological Sciences, University of Catania, 95131 Catania, Italy.ORCID 0000-0002-8678-2183
Tommaso MazzaBioinformatics Unit, Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, Italy.ORCID 0000-0003-0434-8533
Anna AlisiResearch Area for Multifactorial Diseases, Research Unit of Molecular Genetics of Complex Phenotypes, Bambino Gesù Children's Hospital, IRCCS, 00165 Rome, Italy.ORCID 0000-0001-7241-6329
Manlio VinciguerraInternational Clinical Research Center, St. Anne's University Hospital, 65691 Brno, Czech Republic.ORCID 0000-0002-1768-3894
Bambino Gesù Children's Hospital · ITCasa Sollievo della Sofferenza · ITSt. Anne's University Hospital Brno · CZUniversity of Catania · ITMasaryk University · CZMedical University of Varna · BGUniversity College London · GB

Funding

European Research Development Fund CZ.02.1.01/0.0/0.0/15_003/0000492Ministry of Health of the Czech Republic NV18-03-00058
6 · The paper itself

Abstract

Lipid catabolism and anabolism changes play a role in stemness acquisition by cancer cells, and cancer stem cells (CSCs) are particularly dependent on the activity of the enzymes involved in these processes. Lipidomic changes could play a role in CSCs' ability to cause disease relapse and chemoresistance. The exploration of lipid composition and metabolism changes in CSCs in the context of hepatocellular cancer (HCC) is still incomplete and their lipidomic scenario continues to be elusive. We aimed to evaluate through high-throughput mass spectrometry (MS)-based lipidomics the levels of the members of the six major classes of sphingolipids and phospholipids in two HCC cell lines (HepG2 and Huh-7) silenced for the expression of histone variant macroH2A1 (favoring stemness acquisition), or silenced for the expression of focal adhesion tyrosine kinase (FAK) (hindering aggressiveness and stemness). Transcriptomic changes were evaluated by RNA sequencing as well. We found definite lipidomic and transcriptomic changes in the HCC lines upon knockdown (KD) of macroH2A1 or FAK, in line with the acquisition or loss of stemness features. In particular, macroH2A1 KD increased total sphingomyelin (SM) levels and decreased total lysophosphatidylcholine (LPC) levels, while FAK KD decreased total phosphatidylcholine (PC) levels. In conclusion, in HCC cell lines knocked down for specific signaling/epigenetic processes driving opposite stemness potential, we defined a lipidomic signature that hallmarks hepatic CSCs to be exploited for therapeutic strategies.

Indexed as

Lipid MetabolismBiomarkers, TumorCarcinoma, HepatocellularCell Line, TumorFocal Adhesion Kinase 1Gene Expression ProfilingGene Expression Regulation, NeoplasticGene Knockdown TechniquesHep G2 CellsHistonesHumansLipidomicsLiver NeoplasmsLysophosphatidylcholinesNeoplastic Stem CellsPhosphatidylcholinesBiomarkers, TumorFocal Adhesion Kinase 1HistonesLysophosphatidylcholinesMACROH2A1 protein, humanPhosphatidylcholinesPTK2 protein, humanSphingomyelinscancer stem cellsFAKHCCmacroH2A1stemness

Identifiers

PMID33182805
PMCPMC7709039
OpenAlexW3099290989

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.