Evidence map›Paper›PMID 33180803›Full record

ArticlePloS one2020

Repurposing therapeutics for COVID-19: Rapid prediction of commercially available drugs through machine learning and docking.

Sovesh Mohapatra, Prathul Nath, Manisha Chatterjee, Neeladrisingha Das, Deepjyoti Kalita, Partha Roy, Soumitra Satapathi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 2 pooled it
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 2 syntheses or guidelines pooled it, 74 citations in OpenAlex.

  1. Pooled it
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  13. Artificial Intelligence Technologies for COVID-19 De Novo Drug Design.International journal of molecular sciences · 2022
    Review
  14. Article
  15. Article
  16. Review
  17. Artificial Intelligence in Vaccine and Drug Design.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  18. A contemporary review on the important role ofInformatics in medicine unlocked · 2022
    Review
  19. Novel Drug Design for Treatment of COVID-19: A Systematic Review of Preclinical Studies.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sovesh MohapatraDepartment of Physics, Indian Institute of Technology, Roorkee, Haridwar, Uttarakhand, India.
Prathul NathDepartment of Physics, Indian Institute of Technology, Roorkee, Haridwar, Uttarakhand, India.
Manisha ChatterjeeDepartment of Pharmacology, Subharti Medical College, Meerut, Uttar Pradesh, India.
Neeladrisingha DasDepartment of Biotechnology, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, India.
Deepjyoti KalitaDepartment of Microbiology, All India Institute of Medical Science, Rishikesh, Uttarakhand, India.
Partha RoyDepartment of Biotechnology, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, India.
Soumitra SatapathiDepartment of Physics, Indian Institute of Technology, Roorkee, Haridwar, Uttarakhand, India.ORCID 0000-0001-9218-3796
Indian Institute of Technology Roorkee · INAll India Institute of Medical Sciences Rishikesh · INSubharti Medical College · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe outbreak of the novel coronavirus disease COVID-19, caused by the SARS-CoV-2 virus has spread rapidly around the globe during the past 3 months. As the virus infected cases and mortality rate of this disease is increasing exponentially, scientists and researchers all over the world are relentlessly working to understand this new virus along with possible treatment regimens by discovering active therapeutic agents and vaccines. So, there is an urgent requirement of new and effective medications that can treat the disease caused by SARS-CoV-2. METHODS AND

findingsWe perform the study of drugs that are already available in the market and being used for other diseases to accelerate clinical recovery, in other words repurposing of existing drugs. The vast complexity in drug design and protocols regarding clinical trials often prohibit developing various new drug combinations for this epidemic disease in a limited time. Recently, remarkable improvements in computational power coupled with advancements in Machine Learning (ML) technology have been utilized to revolutionize the drug development process. Consequently, a detailed study using ML for the repurposing of therapeutic agents is urgently required. Here, we report the ML model based on the Naive Bayes algorithm, which has an accuracy of around 73% to predict the drugs that could be used for the treatment of COVID-19. Our study predicts around ten FDA approved commercial drugs that can be used for repurposing. Among all, we found that 3 of the drugs fulfils the criterions well among which the antiretroviral drug Amprenavir (DrugBank ID-DB00701) would probably be the most effective drug based on the selected criterions.

conclusionsOur study can help clinical scientists in being more selective in identifying and testing the therapeutic agents for COVID-19 treatment. The ML based approach for drug discovery as reported here can be a futuristic smart drug designing strategy for community applications.

Indexed as

Drug RepositioningMachine LearningMolecular Docking SimulationAlgorithmsBayes TheoremBetacoronavirusCoronavirus InfectionsCOVID-19HumansPandemicsPneumonia, ViralSARS-CoV-2

Identifiers

PMID33180803
PMCPMC7660547
OpenAlexW3103820312

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.