ArticleNucleic acids research2021
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
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Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18citing papers in PubMed
–field-weighted citation impact
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
18 citing papers in PubMed.
- Environmental formermSystems · 2026Article
- NAViFluX: a visualization‑centric platform for interactive analysis, refinement and design of genome‑scale metabolic networks.Bioinformatics (Oxford, England) · 2026Article
- Interpreting Microbiome Signatures with MicrobiomeNet.Current protocols · 2026Article
- Synthetic Biology of Plants and Microbes for Agriculture, Environment, and Future Applications.Chemical reviews · 2026Review
- TidyMass2: advancing LC-MS untargeted metabolomics through metabolite origin inference and metabolic feature-based functional module analysis.Nature communications · 2026Article
- In silico interactome analysis reveals distinct and complementary metabolic roles of bacteria in stingless bee larval food.Computational and structural biotechnology journal · 2026Article
- Article
- ThermOptCobra: Thermodynamically optimal construction and analysis of metabolic networks for reliable phenotype predictions.iScience · 2025Article
- Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community.Molecular systems biology · 2024Article
- Predicting microbial interactions with approaches based on flux balance analysis: an evaluation.BMC bioinformatics · 2024Article
- Community-scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing.Microbial biotechnology · 2024Review
- Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability.Materials today. Bio · 2023Article
- Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes.Annual review of biomedical engineering · 2021Review
- gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models.Genome biology · 2021Article
- Linking Gut Microbiome and Lipid Metabolism: Moving beyond Associations.Metabolites · 2021Review
- The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.Nucleic acids research · 2021Article
- Metabolic Modeling to Interrogate Microbial Disease: A Tale for Experimentalists.Frontiers in molecular biosciences · 2021Review
- Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species.eLife · 2020Article
Corrections and comments
- Erratum for
Authors and funding
22 authors.
Samuel M D SeaverComputing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Filipe LiuComputing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Qizhi ZhangComputing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
James JeffryesComputing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
José P FariaComputing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Janaka N EdirisingheComputing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Michael MundyCenter for Individualized Medicine, Mayo Clinic, Rochester, MN 55905, USA.
Nicholas ChiaCenter for Individualized Medicine, Mayo Clinic, Rochester, MN 55905, USA.
Elad NoorDepartment of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule Zürich, CH-8093 Zürich, Switzerland.
Moritz E BeberNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, 2800, Denmark.
Aaron A BestDepartment of Biology, Hope College, Holland, MI 49423, USA.
Matthew DeJonghDepartment of Computer Science, Hope College, Holland, MI 49423, USA.
Jeffrey A KimbrelBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA.
Patrik D'haeseleerBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA.
Sean R McCorkleComputational Science Initiative, Brookhaven National Laboratory, Upton, NY 11973, USA.
Jay R BoltonEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Erik PearsonEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Shane CanonEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Elisha M Wood-CharlsonEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Robert W CottinghamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA.
Adam P ArkinEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Christopher S HenryComputing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.
Funding
No grant is acknowledged in the PubMed record.
Abstract
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.