Evidence map›Paper›PMID 33179383›Full record

ArticlePlant biotechnology journal2021

Imaging of multiple fluorescent proteins in canopies enables synthetic biology in plants.

Stephen B Rigoulot, Tayler M Schimel, Jun Hyung Lee, Robert G Sears, Holly Brabazon, Jessica S Layton, Li Li, Kerry A Meier, Magen R Poindexter, Manuel J Schmid and 8 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Perspectives in Plant Abiotic Stress Signaling.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Stephen B RigoulotDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Tayler M SchimelCenter for Agricultural Synthetic Biology (CASB), University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
Jun Hyung LeeDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Robert G SearsDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Holly BrabazonDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Jessica S LaytonDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Li LiDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Kerry A MeierDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Magen R PoindexterDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Manuel J SchmidDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Erin M SeaberryDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Jared W BrabazonBrabazon Apps, Knoxville, TN, USA.
Jonathan A MadajianMission Support and Test Services Special Technology Laboratory, Santa Barbara, CA, USA.
Michael J FinanderNecsel IP Inc, Milpitas, CA, USA.
John DiBenedettoMission Support and Test Services Special Technology Laboratory, Santa Barbara, CA, USA.
Alessandro OcchialiniCenter for Agricultural Synthetic Biology (CASB), University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
Scott C LenaghanCenter for Agricultural Synthetic Biology (CASB), University of Tennessee Institute of Agriculture, Knoxville, TN, USA.
C Neal StewartDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.ORCID 0000-0003-3026-9193
University of Tennessee at Knoxville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reverse genetics approaches have revolutionized plant biology and agriculture. Phenomics has the prospect of bridging plant phenotypes with genes, including transgenes, to transform agricultural fields. Genetically encoded fluorescent proteins (FPs) have revolutionized plant biology paradigms in gene expression, protein trafficking and plant physiology. While the first instance of plant canopy imaging of green fluorescent protein (GFP) was performed over 25 years ago, modern phenomics has largely ignored fluorescence as a transgene expression device despite the burgeoning FP colour palette available to plant biologists. Here, we show a new platform for stand-off imaging of plant canopies expressing a wide variety of FP genes. The platform-the fluorescence-inducing laser projector (FILP)-uses an ultra-low-noise camera to image a scene illuminated by compact diode lasers of various colours, coupled with emission filters to resolve individual FPs, to phenotype transgenic plants expressing FP genes. Each of the 20 FPs screened in plants were imaged at >3 m using FILP in a laboratory-based laser range. We also show that pairs of co-expressed fluorescence proteins can be imaged in canopies. The FILP system enabled a rapid synthetic promoter screen: starting from 2000 synthetic promoters transfected into protoplasts to FILP-imaged agroinfiltrated Nicotiana benthamiana plants in a matter of weeks, which was useful to characterize a water stress-inducible synthetic promoter. FILP canopy imaging was also accomplished for stably transformed GFP potato and in a split-GFP assay, which illustrates the flexibility of the instrument for analysing fluorescence signals in plant canopies.

Indexed as

NicotianaSynthetic BiologyGreen Fluorescent ProteinsLuminescent ProteinsPlants, Genetically ModifiedGreen Fluorescent ProteinsLuminescent Proteinsabiotic stressfluorescence imagingfluorescent proteinsplant phenomicsremote sensingsalt stresssynthetic biologysynthetic promoterswater stress

Identifiers

PMID33179383
PMCPMC8051605
OpenAlexW3106367298

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.