Evidence map›Paper›PMID 33177698›Full record

ArticleNature structural & molecular biology2020

Structure and drug binding of the SARS-CoV-2 envelope protein transmembrane domain in lipid bilayers.

Venkata S Mandala, Matthew J McKay, Alexander A Shcherbakov, Aurelio J Dregni, Antonios Kolocouris, Mei Hong

Open access · bronzeAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 242 papers.

0numbers the graph read from it
0cells of the map it votes in
242citing papers in PubMed
35.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

242 citing papers in PubMed, 416 citations in OpenAlex.

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  15. The Redesign of the Molecular Scaffold of Viral Ion Channel Blockers.Computational and structural biotechnology journal · 2026
    Article
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  20. bioRxiv : the preprint server for biology · 2025
    Article

182 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Venkata S MandalaDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-6358-0642
Matthew J McKayDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-3079-9189
Alexander A ShcherbakovDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5728-7175
Aurelio J DregniDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.
Antonios KolocourisDepartment of Pharmaceutical Chemistry, National and Kapodistrian University of Athens, Panepistimioupolis Zografou, Athens, Greece.
Mei HongDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA. meihong@mit.edu.ORCID http://orcid.org/0000-0001-5255-5858
Massachusetts Institute of Technology · USNational and Kapodistrian University of Athens · GR

Funding

TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
Structures and Dynamics of Proton and Cation-Dependent Channels and TransportersR01GM088204 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HONG, MEI · 2009 to 2024
$4.8M
TR&D 4 -- Advanced Magic Angle Spinning NMR methodsP41GM132079 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2019 to 2021
$3.6M
New RF Electronics Console and Probes for 900 Mhz NMR SpectrometerS10OD023513 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2018 to 2018
$1.0M
Investigation of Seeded Alzheimer's Disease Tau Fibrils with Solid-State NMRF31AG069418 · NIA · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DREGNI, AURELIO JAMES · 2020 to 2021
$85k
NIA NIH HHS F31 AG069418NIGMS NIH HHS P41 GM111135NIGMS NIH HHS P41 GM132079NIGMS NIH HHS R01 GM088204NIH HHS S10 OD023513U.S. Department of Health & Human Services | NIH | Center for Information Technology (Center for Information Technology, National Institutes of Health) GM088204U.S. Department of Health & Human Services | NIH | Center for Information Technology (Center for Information Technology, National Institutes of Health) GM111135U.S. Department of Health & Human Services | NIH | Center for Information Technology (Center for Information Technology, National Institutes of Health) GM132079
6 · The paper itself

Abstract

An essential protein of the SARS-CoV-2 virus, the envelope protein E, forms a homopentameric cation channel that is important for virus pathogenicity. Here we report a 2.1-Å structure and the drug-binding site of E's transmembrane domain (ETM), determined using solid-state NMR spectroscopy. In lipid bilayers that mimic the endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane, ETM forms a five-helix bundle surrounding a narrow pore. The protein deviates from the ideal α-helical geometry due to three phenylalanine residues, which stack within each helix and between helices. Together with valine and leucine interdigitation, these cause a dehydrated pore compared with the viroporins of influenza viruses and HIV. Hexamethylene amiloride binds the polar amino-terminal lumen, whereas acidic pH affects the carboxy-terminal conformation. Thus, the N- and C-terminal halves of this bipartite channel may interact with other viral and host proteins semi-independently. The structure sets the stage for designing E inhibitors as antiviral drugs.

Indexed as

AmantadineAmilorideAntiviral AgentsCoronavirus Envelope ProteinsDimyristoylphosphatidylcholineHydrogen-Ion ConcentrationLipid BilayersMagnetic Resonance SpectroscopyModels, MolecularPhenylalaninePhospholipidsProtein ConformationProtein DomainsSARS-CoV-25-(N,N-hexamethylene)amilorideAmantadineAmilorideAntiviral AgentsCoronavirus Envelope ProteinsDimyristoylphosphatidylcholineenvelope protein, SARS-CoV-2Lipid BilayersPhenylalaninePhospholipids

Identifiers

PMID33177698
PMCPMC7718435
OpenAlexW3105514776

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.