Evidence map›Paper›PMID 33177527›Full record

ArticleScientific reports2020

A simple PCR-based method for the rapid and accurate identification of spider mites (Tetranychidae) on cassava.

Tatiana M Ovalle, Aymer Andrés Vásquez-Ordóñez, Jenyfer Jimenez, Soroush Parsa, Wilmer J Cuellar, Luis A Becerra Lopez-Lavalle

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tatiana M OvalleCentro Internacional de Agricultura Tropical (CIAT), Km 17, Recta Cali-Palmira, 763537, Cali, Valle del Cauca, Colombia.
Aymer Andrés Vásquez-OrdóñezCentro Internacional de Agricultura Tropical (CIAT), Km 17, Recta Cali-Palmira, 763537, Cali, Valle del Cauca, Colombia.
Jenyfer JimenezCentro Internacional de Agricultura Tropical (CIAT), Km 17, Recta Cali-Palmira, 763537, Cali, Valle del Cauca, Colombia.
Soroush ParsaCentro Internacional de Agricultura Tropical (CIAT), Km 17, Recta Cali-Palmira, 763537, Cali, Valle del Cauca, Colombia.
Wilmer J CuellarCentro Internacional de Agricultura Tropical (CIAT), Km 17, Recta Cali-Palmira, 763537, Cali, Valle del Cauca, Colombia.ORCID 0000-0003-4702-3237
Luis A Becerra Lopez-LavalleCentro Internacional de Agricultura Tropical (CIAT), Km 17, Recta Cali-Palmira, 763537, Cali, Valle del Cauca, Colombia. l.a.becerra@cgiar.org.ORCID 0000-0003-3520-2270

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The morphological identification of mites entails great challenges. Characteristics such as dorsal setae and aedeagus are widely used, but they show variations between populations, and the technique is time consuming and demands specialized taxonomic expertise that is difficult to access. A successful alternative has been to exploit a region of the mitochondrial cytochrome oxidase I (COI) gene to classify specimens to the species level. We analyzed the COI sequences of four mite species associated with cassava and classified them definitively by detailed morphological examinations. We then developed an identification kit based on the restriction fragment length polymorphism-polymerase chain reaction of subunit I of the COI gene focused on the three restriction enzymes AseI, MboII, and ApoI. This set of enzymes permitted the simple, accurate identification of Mononychellus caribbeanae, M. tanajoa, M. mcgregori, and Tetranychus urticae, rapidly and with few resources. This kit could be a vital tool for the surveillance and monitoring of mite pests in cassava crop protection programs in Africa, Asia, and Latin America.

Indexed as

AnimalsCrop ProtectionDNA, MitochondrialDNA Restriction EnzymesElectron Transport Complex IVManihotPhylogenyPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthSequence AlignmentSpecies SpecificityTetranychidaeTime FactorsDNA, MitochondrialDNA Restriction EnzymesElectron Transport Complex IV

Identifiers

PMID33177527
PMCPMC7658231

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.