Evidence map›Paper›PMID 33177522›Full record

ArticleNature communications2020

The auxin-inducible degron 2 technology provides sharp degradation control in yeast, mammalian cells, and mice.

Aisha Yesbolatova, Yuichiro Saito, Naomi Kitamoto, Hatsune Makino-Itou, Rieko Ajima, Risako Nakano, Hirofumi Nakaoka, Kosuke Fukui, Kanae Gamo, Yusuke Tominari and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 349 papers.

0numbers the graph read from it
0cells of the map it votes in
349citing papers in PubMed
16.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

349 citing papers in PubMed, 538 citations in OpenAlex.

  1. Post-Translational Regulation Using Degrons in Ewing Sarcoma.Methods in molecular biology (Clifton, N.J.) · 2027
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  20. NNature · 2026
    Article

289 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Aisha YesbolatovaDepartment of Chromosome Science, National Institute of Genetics, Research Organization of Information and Systems (ROIS), Yata 1111, Mishima, Shizuoka, 411-8540, Japan.ORCID 0000-0001-5794-9610
Yuichiro SaitoDepartment of Chromosome Science, National Institute of Genetics, Research Organization of Information and Systems (ROIS), Yata 1111, Mishima, Shizuoka, 411-8540, Japan.ORCID 0000-0001-5001-0934
Naomi KitamotoDepartment of Chromosome Science, National Institute of Genetics, Research Organization of Information and Systems (ROIS), Yata 1111, Mishima, Shizuoka, 411-8540, Japan.
Hatsune Makino-ItouDepartment of Gene Function and Phenomics, National Institute of Genetics, ROIS, Yata 1111, Mishima, Shizuoka, 411-8540, Japan.
Rieko AjimaDepartment of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Yata 1111, Mishima, Shizuoka, 411-8540, Japan.ORCID 0000-0001-9740-2660
Risako NakanoLaboratory of Chemical Pharmacology, Graduate School of Pharmaceutical Sciences, University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan.
Hirofumi NakaokaDepartment of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Yata 1111, Mishima, Shizuoka, 411-8540, Japan.ORCID 0000-0002-8454-1159
Kosuke FukuiDepartment of Biochemistry, Okayama University of Science, Ridai-cho 1-1, Okayama, 700-0005, Japan.
Kanae GamoFIMECS, Inc., Muraoka-Higashi 2-26-1, Fujisawa, Kanagawa, 251-0012, Japan.
Yusuke TominariFIMECS, Inc., Muraoka-Higashi 2-26-1, Fujisawa, Kanagawa, 251-0012, Japan.ORCID 0000-0002-1431-4487
Haruki TakeuchiLaboratory of Chemical Pharmacology, Graduate School of Pharmaceutical Sciences, University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan.ORCID 0000-0003-4911-4060
Yumiko SagaDepartment of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Yata 1111, Mishima, Shizuoka, 411-8540, Japan.ORCID 0000-0001-9198-5164
Ken-Ichiro HayashiDepartment of Biochemistry, Okayama University of Science, Ridai-cho 1-1, Okayama, 700-0005, Japan.ORCID 0000-0002-9812-2801
Masato T KanemakiDepartment of Chromosome Science, National Institute of Genetics, Research Organization of Information and Systems (ROIS), Yata 1111, Mishima, Shizuoka, 411-8540, Japan. mkanemak@nig.ac.jp.ORCID 0000-0002-7657-1649
National Institute of Genetics · JPOkayama University of Science · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein knockdown using the auxin-inducible degron (AID) technology is useful to study protein function in living cells because it induces rapid depletion, which makes it possible to observe an immediate phenotype. However, the current AID system has two major drawbacks: leaky degradation and the requirement for a high dose of auxin. These negative features make it difficult to control precisely the expression level of a protein of interest in living cells and to apply this method to mice. Here, we overcome these problems by taking advantage of a bump-and-hole approach to establish the AID version 2 (AID2) system. AID2, which employs an OsTIR1(F74G) mutant and a ligand, 5-Ph-IAA, shows no detectable leaky degradation, requires a 670-times lower ligand concentration, and achieves even quicker degradation than the conventional AID. We demonstrate successful generation of human cell mutants for genes that were previously difficult to deal with, and show that AID2 achieves rapid target depletion not only in yeast and mammalian cells, but also in mice.

Indexed as

AnimalsCell Cycle ProteinsDNA-Binding ProteinsFemaleHCT116 CellsHippocampusHumansIndoleacetic AcidsMaleMice, Inbred BALB CMice, Inbred C57BLMice, TransgenicMinichromosome Maintenance ProteinsMutationNeuronsNuclear ProteinsCDC45 protein, S cerevisiaeCell Cycle ProteinsDNA-Binding Proteinsindoleacetic acidIndoleacetic AcidsMCM10 protein, S cerevisiaeMinichromosome Maintenance ProteinsNuclear ProteinsPlant ProteinsRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSld3 protein, S cerevisiae

Identifiers

PMID33177522
PMCPMC7659001
OpenAlexW3102624934

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.