Evidence map›Paper›PMID 33175893›Full record

ArticlePloS one2020

P.F508del editing in cells from cystic fibrosis patients.

Svetlana A Smirnikhina, Ekaterina V Kondrateva, Elmira P Adilgereeva, Arina A Anuchina, Milyausha I Zaynitdinova, Yana S Slesarenko, Angelina S Ershova, Kirill D Ustinov, Matvei I Yasinovsky, Elena L Amelina and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Reporter Alleles in hiPSCs: Visual Cues on Development and Disease.International journal of molecular sciences · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Frontiers in immunology · 2022
    Review
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Svetlana A SmirnikhinaLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.ORCID 0000-0002-1558-3048
Ekaterina V KondratevaLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Elmira P AdilgereevaLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Arina A AnuchinaLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Milyausha I ZaynitdinovaLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Yana S SlesarenkoLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Angelina S ErshovaNazarbayev University, School of Science and Technology, Nur-Sultan, Republic of Kazakhstan.
Kirill D UstinovLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Matvei I YasinovskyLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Elena L AmelinaLaboratory of Cystic Fibrosis, Research Institute of Pulmonology, Moscow, Russian Federation.
Ekaterina S VoroninaLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.ORCID 0000-0002-5789-0927
Valentina D YakushinaLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Vyacheslav Yu TabakovLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Alexander V LavrovLaboratory of Genome Editing, Research Centre for Medical Genetics, Moscow, Russian Federation.
Research Centre for Medical Genetics · RUNazarbayev University · KZRussian Research Institute of Hematology and Transfusiology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Development of genome editing methods created new opportunities for the development of etiology-based therapies of hereditary diseases. Here, we demonstrate that CRISPR/Cas9 can correct p.F508del mutation in the CFTR gene in the CFTE29o- cells and induced pluripotent stem cells (iPSCs) derived from patients with cystic fibrosis (CF). We used several combinations of Cas9, sgRNA and ssODN and measured editing efficiency in the endogenous CFTR gene and in the co-transfected plasmid containing the CFTR locus with the p.F508del mutation. The non-homologous end joining (NHEJ) frequency in the CFTR gene in the CFTE29o- cells varied from 1.25% to 2.54% of alleles. The best homology-directed repair (HDR) frequency in the endogenous CFTR locus was 1.42% of alleles. In iPSCs, the NHEJ frequency in the CFTR gene varied from 5.5% to 12.13% of alleles. The best HDR efficacy was 2.38% of alleles. Our results show that p.F508del mutation editing using CRISPR/Cas9 in CF patient-derived iPSCs is a relatively rare event and subsequent cell selection and cultivation should be carried out.

Indexed as

Cells, CulturedCRISPR-Cas SystemsCystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorDNA RepairGene EditingHumansInduced Pluripotent Stem CellsCystic Fibrosis Transmembrane Conductance Regulatorcystic fibrosis transmembrane conductance regulator delta F508

Identifiers

PMID33175893
PMCPMC7657551
OpenAlexW3098842729

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.