Evidence map›Paper›PMID 33175217›Full record

ArticleImmunogenetics2020

Association of HLA-DQ and IL13 gene variants with challenge-proven shrimp allergy in West Bengal, India.

Arghya Laha, Amlan Ghosh, Saibal Moitra, Himani Biswas, Nimai Chandra Saha, Srijit Bhattacharya, Goutam Kumar Saha, Sanjoy Podder

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Article in Immunogenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Arghya LahaAllergology and Applied Entomology Research Laboratory, Department of Zoology, University of Burdwan, Bardhaman, 713104, West Bengal, India.
Amlan GhoshDepartment of Life Sciences, Presidency University, Kolkata, 700073, West Bengal, India.
Saibal MoitraAllergy and Asthma Research Centre, Kolkata- 700029, West Bengal, India.
Himani BiswasPost Graduate Department of Zoology, Krishnagar Government College, Krishnagar, 741101, West Bengal, India.
Nimai Chandra SahaVice-Chancellor, University of Burdwan, Bardhaman, 713104, West Bengal, India.
Srijit BhattacharyaPost Graduate Department of Physics, Barasat Government College, Kolkata, 700124, West Bengal, India.
Goutam Kumar SahaDepartment of Zoology, University of Calcutta, Kolkata, 700019, West Bengal, India.
Sanjoy PodderAllergology and Applied Entomology Research Laboratory, Department of Zoology, University of Burdwan, Bardhaman, 713104, West Bengal, India. skpzoo2@rediffmail.com.ORCID 0000-0003-1316-164X
University of Burdwan · INGovernment of West Bengal · INNational Allergy Asthma Bronchitis Institute · INPresidency University · INUniversity of Calcutta · IN

Funding

INTERNATIONAL TRAINING IN AIDS-RELATED EPIDEMIOLOGYD43TW000004 · FIC · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI ESSEX, MYRON E · 1988 to 2012
$13.4M
6 · The paper itself

Abstract

Little is known about genetic factors and mechanisms underlying shrimp allergy. Genome-wide association studies identified HLA class-II and IL13 genes as highly plausible candidates for shrimp allergy. The present study was designed to investigate potential associations of HLA-DQ rs9275596, IL13 rs20541, and IL13 rs1800925 polymorphisms with challenge-proven shrimp allergy using the data from 532 people of West Bengal, India; selected on basis of positive skin prick test, elevated specific IgE and medical history. Risk genotypes, i.e., HLA-DQ rs9275596 CC, IL13 rs20541 AA, and IL13 rs1800925 TT, were found to be significantly associated with challenge positive shrimp allergy (P = 0.04, 0.01, and 0.03, respectively). Distribution of genotypes for HLA-DQ and IL13 polymorphisms in allergic and control subjects showed significant difference between younger (20-40 years) and older (> 40 years) age group (P = 0.006). Risk genotypes significantly associated with elevated shrimp-specific IgE. IL13 TA haplotype significantly associated with shrimp allergy and elevated specific IgE (P = 0.02). Synergistic effect of IL13 TA haplotype-HLA-DQ rs9275596 CC genotype interaction significantly elevated specific IgE (P = 0.03). The present study suggests that HLA-DQ and IL13 polymorphisms pose major risk for shrimp allergic patients in West Bengal, India and thus could be helpful for early target-specific therapeutic intervention in near future.

Indexed as

Polymorphism, Single NucleotideAdministration, OralAdultAgedAnimalsCase-Control StudiesFemaleFollow-Up StudiesGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHaplotypesHLA-DQ AntigensHumansImmunoglobulin EIndiaHLA-DQ AntigensImmunoglobulin EInterleukin-13HLA-DQIL13Shrimp challengeShrimp-specific IgESNP

Identifiers

PMID33175217
OpenAlexW3099410007

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.