Evidence map›Paper›PMID 33173096›Full record

ArticleScientific reports2020

Transcriptome analysis of xa5-mediated resistance to bacterial leaf streak in rice (Oryza sativa L.).

Xiaofang Xie, Zhiwei Chen, Binghui Zhang, Huazhong Guan, Yan Zheng, Tao Lan, Jing Zhang, Mingyue Qin, Weiren Wu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. The Role of Genetic Resistance in Rice Disease Management.International journal of molecular sciences · 2025
    Review
  6. Article
  7. Article
  8. Transcriptome Analysis in Response to Infection ofInternational journal of molecular sciences · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xiaofang XieCollege of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China.
Zhiwei ChenFujian Key Laboratory of Crop Breeding by Design, Fujian Agriculture and Forestry University, Fuzhou, China.
Binghui ZhangInstitute of Tobacco Science, Fujian Provincial Tobacco Company, Fuzhou, China.
Huazhong GuanFujian Key Laboratory of Crop Breeding by Design, Fujian Agriculture and Forestry University, Fuzhou, China.
Yan ZhengCollege of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China.
Tao LanFujian Key Laboratory of Crop Breeding by Design, Fujian Agriculture and Forestry University, Fuzhou, China.
Jing ZhangFujian Key Laboratory of Crop Breeding by Design, Fujian Agriculture and Forestry University, Fuzhou, China.
Mingyue QinCollege of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China.
Weiren WuFujian Key Laboratory of Crop Breeding by Design, Fujian Agriculture and Forestry University, Fuzhou, China. wuwr@fafu.edu.cn.
Fujian Agriculture and Forestry University · CNTobacco Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial leaf steak (BLS) caused by Xanthomonas oryzae pv. oryzicola (Xoc) is a devastating disease in rice production. The resistance to BLS in rice is a quantitatively inherited trait, of which the molecular mechanism is still unclear. It has been proved that xa5, a recessive bacterial blast resistance gene, is the most possible candidate gene of the QTL qBlsr5a for BLS resistance. To study the molecular mechanism of xa5 function in BLS resistance, we created transgenic lines with RNAi of Xa5 (LOC_Os05g01710) and used RNA-seq to analyze the transcriptomes of a Xa5-RNAi line and the wild-type line at 9 h after inoculation with Xoc, with the mock inoculation as control. We found that Xa5-RNAi could (1) increase the resistance to BLS as expected from xa5; (2) alter (mainly up-regulate) the expression of hundreds of genes, most of which were related to disease resistance; and (3) greatly enhance the response of thousands of genes to Xoc infection, especially of the genes involved in cell death pathways. The results suggest that xa5 is the cause of BLS-resistance of QTL qBlsr5a and it displays BLS resistance effect probably mainly because of the enhanced response of the cell death-related genes to Xoc infection.

Indexed as

Disease ResistanceGene Expression ProfilingGene Expression Regulation, PlantOryzaPlants, Genetically ModifiedRNA InterferenceSequence Analysis, RNAXanthomonas

Identifiers

PMID33173096
PMCPMC7656458
OpenAlexW3101519480

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.