Evidence map›Paper›PMID 33173092›Full record

ArticleScientific reports2020

Impaired ability of Nef to counteract SERINC5 is associated with reduced plasma viremia in HIV-infected individuals.

Mako Toyoda, Doreen Kamori, Toong Seng Tan, Kageaki Goebuchi, Jun Ohashi, Jonathan Carlson, Ai Kawana-Tachikawa, Hiroyuki Gatanaga, Shinichi Oka, Massimo Pizzato and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. SERINC5 counters retroviruses and non-retroviruses.Frontiers in cellular and infection microbiology · 2024
    Review
  5. HIV-1 restriction by SERINC5.Medical microbiology and immunology · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Mako ToyodaJoint Research Center for Human Retrovirus Infection, Kumamoto University, 2-2-1 Honjo, Kumamoto, 860-0811, Japan.
Doreen KamoriJoint Research Center for Human Retrovirus Infection, Kumamoto University, 2-2-1 Honjo, Kumamoto, 860-0811, Japan.
Toong Seng TanJoint Research Center for Human Retrovirus Infection, Kumamoto University, 2-2-1 Honjo, Kumamoto, 860-0811, Japan.
Kageaki GoebuchiJoint Research Center for Human Retrovirus Infection, Kumamoto University, 2-2-1 Honjo, Kumamoto, 860-0811, Japan.
Jun OhashiUniversity of Tokyo, Tokyo, Japan.
Jonathan CarlsonMicrosoft Research, Los Angeles, CA, USA.
Ai Kawana-TachikawaAIDS Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Hiroyuki GatanagaJoint Research Center for Human Retrovirus Infection, Kumamoto University, 2-2-1 Honjo, Kumamoto, 860-0811, Japan.
Shinichi OkaJoint Research Center for Human Retrovirus Infection, Kumamoto University, 2-2-1 Honjo, Kumamoto, 860-0811, Japan.
Massimo PizzatoDepartment of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy.
Takamasa UenoJoint Research Center for Human Retrovirus Infection, Kumamoto University, 2-2-1 Honjo, Kumamoto, 860-0811, Japan. uenotaka@kumamoto-u.ac.jp.
Kumamoto University · JPMicrosoft (United States) · USNational Institute of Infectious Diseases · JPThe University of Tokyo · JPUniversity of Trento · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HIV-1 Nef plays an essential role in enhancing virion infectivity by antagonizing the host restriction molecule SERINC5. Because Nef is highly polymorphic due to the selective forces of host cellular immunity, we hypothesized that certain immune-escape polymorphisms may impair Nef's ability to antagonize SERINC5 and thereby influence viral fitness in vivo. To test this hypothesis, we identified 58 Nef polymorphisms that were overrepresented in HIV-infected patients in Japan sharing the same HLA genotypes. The number of immune-associated Nef polymorphisms was inversely correlated with the plasma viral load. By breaking down the specific HLA allele-associated mutations, we found that a number of the HLA-B*51:01-associated Y120F and Q125H mutations were most significantly associated with a reduced plasma viral load. A series of biochemical experiments showed that the double mutations Y120F/Q125H, but not either single mutation, impaired Nef's ability to antagonize SERINC5 and was associated with decreasing virion infectivity and viral replication in primary lymphocytes. In contrast, other Nef functions such as CD4, CCR5, CXCR4 and HLA class I downregulation and CD74 upregulation remained unchanged. Taken together, our results suggest that the differential ability of Nef to counteract SERINC5 by naturally occurring immune-associated mutations was associated with the plasma viral load in vivo.

Indexed as

CD4 AntigensCell LineCells, CulturedHIV-1HIV InfectionsHLA-B AntigensHumansImmune EvasionLeukocytes, MononuclearMembrane GlycoproteinsMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusViral LoadViremiaVirus ReplicationCD4 AntigensHLA-B AntigensMembrane GlycoproteinsMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusSERINC3 protein, humanSERINC5 protein, human

Identifiers

PMID33173092
PMCPMC7656250
OpenAlexW3103491461

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.