Evidence map›Paper›PMID 33173044›Full record

ArticleScientific reports2020

Antibiotic-induced DNA damage results in a controlled loss of pH homeostasis and genome instability.

James Alexander Booth, Mário Špírek, Tekle Airgecho Lobie, Kirsten Skarstad, Lumir Krejci, Magnar Bjørås

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Hachiman is a genome integrity sensor.bioRxiv : the preprint server for biology · 2024
    Article
  8. Review
  9. Review
  10. Regulation of phosphate starvation-specific responses inMicrobiology (Reading, England) · 2023
    Review
  11. Article
  12. Antimicrobial resistance: A challenge awaiting the post-COVID-19 era.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

James Alexander BoothDepartment of Microbiology, University of Oslo and Oslo University Hospital, Rikshospitalet, Oslo, Norway. james.booth@rr-research.no.
Mário ŠpírekDepartment of Biology, Masaryk University, Kamenice 5/A7, 625 00, Brno, Czech Republic.
Tekle Airgecho LobieDepartment of Microbiology, University of Oslo and Oslo University Hospital, Rikshospitalet, Oslo, Norway.
Kirsten SkarstadDepartment of Microbiology, University of Oslo and Oslo University Hospital, Rikshospitalet, Oslo, Norway.
Lumir KrejciDepartment of Biology, Masaryk University, Kamenice 5/A7, 625 00, Brno, Czech Republic.
Magnar BjøråsDepartment of Microbiology, University of Oslo and Oslo University Hospital, Rikshospitalet, Oslo, Norway. magnar.bjoras@rr-research.no.
Oslo University Hospital · NOSt. Anne's University Hospital Brno · CZUniversity Hospital Brno · CZUniversity of Oslo · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extracellular pH has been assumed to play little if any role in how bacteria respond to antibiotics and antibiotic resistance development. Here, we show that the intracellular pH of Escherichia coli equilibrates to the environmental pH following treatment with the DNA damaging antibiotic nalidixic acid. We demonstrate that this allows the environmental pH to influence the transcription of various DNA damage response genes and physiological processes such as filamentation. Using purified RecA and a known pH-sensitive mutant variant RecA K250R we show how pH can affect the biochemical activity of a protein central to control of the bacterial DNA damage response system. Finally, two different mutagenesis assays indicate that environmental pH affects antibiotic resistance development. Specifically, at environmental pH's greater than six we find that mutagenesis plays a significant role in producing antibiotic resistant mutants. At pH's less than or equal to 6 the genome appears more stable but extensive filamentation is observed, a phenomenon that has previously been linked to increased survival in the presence of macrophages.

Indexed as

Anti-Bacterial AgentsDNA DamageElectrophoretic Mobility Shift AssayEscherichia coliFlow CytometryGenomic InstabilityHydrogen-Ion ConcentrationMicrobial ViabilityNalidixic AcidPropidiumRifampinUltraviolet RaysAnti-Bacterial AgentsNalidixic AcidPropidiumRifampin

Identifiers

PMID33173044
PMCPMC7655802
OpenAlexW3103979052

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.