Evidence map›Paper›PMID 33172970›Full record

ArticlemSystems2020

Chemical Profiling Provides Insights into the Metabolic Machinery of Hydrocarbon-Degrading Deep-Sea Microbes.

Aldo Moreno-Ulloa, Victoria Sicairos Diaz, Javier A Tejeda-Mora, Marla I Macias Contreras, Fernando Díaz Castillo, Abraham Guerrero, Ricardo Gonzalez Sanchez, Omar Mendoza-Porras, Rafael Vazquez Duhalt, Alexei Licea-Navarro

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 31 citations in OpenAlex.

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  5. Quantifying microbial guilds.ISME communications · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Aldo Moreno-UlloaDepartamento de Innovación Biomédica, Centro de Investigación Científica y de Educación Superior de Ensenada, Baja California (CICESE), Ensenada, México.ORCID https://orcid.org/0000-0001-7973-4215
Victoria Sicairos DiazConsorcio de Investigación del Golfo de México (CIGOM), CICESE, Ensenada, México.
Javier A Tejeda-MoraDepartamento de Innovación Biomédica, Centro de Investigación Científica y de Educación Superior de Ensenada, Baja California (CICESE), Ensenada, México.
Marla I Macias ContrerasConsorcio de Investigación del Golfo de México (CIGOM), CICESE, Ensenada, México.
Fernando Díaz CastilloConsorcio de Investigación del Golfo de México (CIGOM), CICESE, Ensenada, México.
Abraham GuerreroConsorcio de Investigación del Golfo de México (CIGOM), CICESE, Ensenada, México.
Ricardo Gonzalez SanchezDepartamento de Innovación Biomédica, Centro de Investigación Científica y de Educación Superior de Ensenada, Baja California (CICESE), Ensenada, México.
Omar Mendoza-PorrasCSIRO Livestock and Aquaculture, Queensland Bioscience Precinct, St Lucia, QLD, Australia.
Rafael Vazquez DuhaltConsorcio de Investigación del Golfo de México (CIGOM), CICESE, Ensenada, México.
Alexei Licea-NavarroDepartamento de Innovación Biomédica, Centro de Investigación Científica y de Educación Superior de Ensenada, Baja California (CICESE), Ensenada, México alicea@cicese.mx.ORCID https://orcid.org/0000-0003-4022-7405
Centro de Investigación Científica y de Educación Superior de Ensenada · MXCentro de Investigación en Alimentación y Desarrollo · MXCommonwealth Scientific and Industrial Research Organisation · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine microbes are known to degrade hydrocarbons; however, microbes inhabiting deep-sea sediments remain largely unexplored. Previous studies into the classical pathways of marine microbial metabolism reveal diverse chemistries; however, metabolic profiling of marine microbes cultured with hydrocarbons is limited. In this study, taxonomic (amplicon sequencing) profiles of two environmental deep-sea sediments (>1,200 m deep) were obtained, along with taxonomic and metabolomic (mass spectrometry-based metabolomics) profiles of microbes harbored in deep-sea sediments cultured with hydrocarbons as the sole energy source. Samples were collected from the Gulf of México (GM) and cultured for 28 days using simple (toluene, benzene, hexadecane, and naphthalene) and complex (petroleum API 40) hydrocarbon mixtures as the sole energy sources. The sediment samples harbored diverse microbial communities predominantly classified into

Indexed as

16S rRNAdeep-sea microbeshydrocarbon degradationmarine bacteriamass spectrometrymetabolomics

Identifiers

PMID33172970
PMCPMC7657597
OpenAlexW3101783565

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.