Evidence map›Paper›PMID 33172483›Full record

ArticleParasites & vectors2020

De novo assembly and analysis of the transcriptome of the Dermacentor marginatus genes differentially expressed after blood-feeding and long-term starvation.

Ercha Hu, Yuan Meng, Ying Ma, Ruiqi Song, Zhengxiang Hu, Min Li, Yunwei Hao, Xinli Fan, Liting Wei, Shilong Fan and 7 more

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 2 countries.

Ercha Hu *College of Animal Science, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Yuan Meng *College of Animal Science and Technology, Qingdao Agricultural University, Qingdao, 266109, Shandong Province, People's Republic of China.
Ying MaCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Ruiqi SongCollege of Animal Science, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Zhengxiang HuBayingol Vocational and Technical College, Korla, 841000, Xinjiang Uygur Autonomous Region, People's Republic of China.
Min LiCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Yunwei HaoCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Xinli FanCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Liting WeiCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Shilong FanCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Songqin ChenCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Xuejie ZhaiCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Yongchang LiCollege of Animal Science, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Wei ZhangCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Yang ZhangCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China.
Qingyong GuoCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China. 83949588@qq.com.
Chahan BayinCollege of Veterinary Medicine, Xinjiang Agricultural University, Ürümqi, 830052, Xinjiang Uygur Autonomous Region, People's Republic of China. 2514062881@qq.com.
Xinjiang Agricultural University · CNObihiro University of Agriculture and Veterinary Medicine · JPQingdao Agricultural University · CN

Funding

Department of Education, Xinjiang Uygur Autonomous Region XJEDU20201008National Natural Science Foundation of China 31660711
6 · The paper itself

Abstract

backgroundThe ixodid tick Dermacentor marginatus is a vector of many pathogens wide spread in Eurasia. Studies of gene sequence on many tick species have greatly increased the information on tick protective antigen which might have the potential to function as effective vaccine candidates or drug targets for eco-friendly acaricide development. In the current study, RNA-seq was applied to identify D. marginatus sequences and analyze differentially expressed unigenes.

methodsTo obtain a broader picture of gene sequences and changes in expression level, RNA-seq was performed to obtain the whole-body transcriptome data of D. marginatus adult female ticks after engorgement and long-term starvation. Subsequently, the real-time quantitative PCR (RT-qPCR) was applied to validate the RNA-seq data.

resultsRNA-seq produced 30,251 unigenes, of which 32% were annotated. Gene expression was compared among groups that differed by status as newly molted, starved and engorged female adult ticks. Nearly one third of the unigenes in each group were differentially expressed compared to the other two groups, and the most numerous were genes encoding proteins involved in catalytic and binding activities and apoptosis. Selected up-regulated differentially expressed genes in each group were associated to protein, lipids, carbohydrate and chitin metabolism. Blood-feeding and long-term starvation also caused genes differentially expressed in the defense response and antioxidant response. RT-qPCR results indicated 6 differentially expressed transcripts showed similar trends in expression changes with RNA-seq results confirming that the gene expression profiles in transcriptome data is in consistent with RT-qPCR validation.

conclusionsObtaining the sequence information of D. marginatus and characterizing the expression pattern of the genes involved in blood-feeding and during starvation would be helpful in understanding molecular physiology of D. marginatus and provides data for anti-tick vaccine and drug development for controlling the tick.

Indexed as

DermacentorGene ExpressionTranscriptomeAnimalsFeeding BehaviorFemaleGene Expression ProfilingPhylogenyStarvationDermacentor marginatusDifferential expressionRNA-seqTick physiologyTranscriptomics

Identifiers

PMID33172483
PMCPMC7654163
OpenAlexW3104639788

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.